RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CYSLTR2Q9NS75 346 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 LIN7CQ9NUP9 197 aaKnown RBP5.64□□□□□ -1.51
SCN1A-217ENST00000637988 PTTG3PQ9NZH4 202 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 MRPL15Q9P015 296 aaKnown RBP5.64□□□□□ -1.51
SCN1A-217ENST00000637988 TMEM181Q9P2C4 612 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 GIFP27352 417 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 DSCR4P56555 118 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-217ENST00000637988 ALKBH6Q3KRA9 238 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 ETFRF1Q6IPR1 90 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 BLOC1S3Q6QNY0 202 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 VASH2Q86V25 355 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 LRRTM3Q86VH5 581 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 FJX1Q86VR8 437 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 THNSL2Q86YJ6 484 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 PNPLA1Q8N8W4 532 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 UTP4Q969X6 686 aaKnown RBP5.64□□□□□ -1.51
SCN1A-217ENST00000637988 CNTNAP3BQ96NU0 1288 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 CSF3RQ99062 836 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 C20orf85Q9H1P6 137 aa5.64□□□□□ -1.51
SCN1A-217ENST00000637988 FOXO6A8MYZ6 492 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 CCL21O00585 134 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 KLF11O14901 512 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SLC31A2O15432 143 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 CNMDO75829 334 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 STSP08842 583 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RAB40ALP0C0E4 278 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PRF1P14222 555 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 OPRM1P35372 400 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 WDR4P57081 412 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RNF4P78317 190 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 FAM111BQ6SJ93 734 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RPS27LQ71UM5 84 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SERPINA11Q86U17 422 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MARCH3Q86UD3 253 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 CLECL1Q8IZS7 167 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 OR2Z1Q8NG97 314 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RAB40AQ8WXH6 277 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF764Q96H86 408 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 FOXN4Q96NZ1 517 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 XYLT2Q9H1B5 865 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ARV1Q9H2C2 271 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ZCCHC4Q9H5U6 513 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MOB1AQ9H8S9 216 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 EBF2Q9HAK2 575 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ACKR4Q9NPB9 350 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SMOXQ9NWM0 555 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PPIL1Q9Y3C6 166 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 AK6Q9Y3D8 172 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 THADAQ6YHU6 1953 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SCN1AP35498 2009 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PDCD11Q14690 1871 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 LMO7DNF2Z398 122 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SPRY3O43610 288 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 TXNDC12O95881 172 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 TMIGD3P0DMS9 266 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 NID1P14543 1247 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SLC35B1P78383 322 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PPP1R8Q12972 351 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 COL9A2Q14055 689 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 UNC50Q53HI1 259 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF425Q6IV72 752 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ADGRF3Q8IZF5 1079 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 STACQ99469 402 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MACROD1Q9BQ69 325 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RHNO1Q9BSD3 238 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 CHRDL1Q9BU40 450 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SEBOXQ9HB31 216 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 NFS1Q9Y697 457 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 CSNK1G3Q9Y6M4 447 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 BCORQ6W2J9 1755 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 A0A1W2PPC4 97 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 E7ESA3 106 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 NPY4RP50391 375 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RHOBP62745 196 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MRPS34P82930 218 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 HSF1Q00613 529 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 VEZF1Q14119 521 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 TIGITQ495A1 244 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 JMJD6Q6NYC1 403 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 DPY19L2P2Q6ZN68 376 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 TSPYL5Q86VY4 417 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 OR52N5Q8NH56 324 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 OR51E2Q9H255 320 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SLC38A1Q9H2H9 487 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MTCH1Q9NZJ7 389 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MRPS28Q9Y2Q9 187 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SNX11Q9Y5W9 270 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 NHSQ6T4R5 1651 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 HEATR5BQ9P2D3 2071 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 I3L521 148 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ANKRD34CP0C6C1 535 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF93P35789 620 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 C1orf140Q5VVS0 124 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 FAM198BQ6UWH4 519 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 C19orf35Q6ZS72 473 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SCML4Q8N228 414 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF441Q8N8Z8 693 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SIMC1Q8NDZ2 872 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 OR7G2Q8NG99 324 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF480Q8WV37 535 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms