RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 C11orf65Q8NCR3 313 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 STON2Q8WXE9 905 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 GTF3AQ92664 365 aaKnown RBP13.93□□□□□ -0.18
CLN3-255ENST00000637100 NABP1Q96AH0 204 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 LRRC58Q96CX6 371 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 ELMOD3Q96FG2 381 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 ZNF347Q96SE7 839 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 EBF4Q9BQW3 602 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 RNF121Q9H920 327 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 SAP30LQ9HAJ7 183 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 NTN4Q9HB63 628 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 NKIRAS1Q9NYS0 192 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 UGT2A1Q9Y4X1 527 aa13.93□□□□□ -0.18
CLN3-255ENST00000637100 TRRAPQ9Y4A5 3859 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 IQCMA0A1B0GVH7 501 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 H3BSA7 217 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 POLR3GO15318 223 aaPredicted RBP13.92□□□□□ -0.18
CLN3-255ENST00000637100 TMPRSS2O15393 492 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 RGS9O75916 674 aaPredicted RBP13.92□□□□□ -0.18
CLN3-255ENST00000637100 MT-ND5P03915 603 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 CD55P08174 381 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 WNT5AP41221 380 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 ZNF81P51508 661 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 CRYBA2P53672 197 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 ARMC4Q5T2S8 1044 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 ZNF101Q8IZC7 436 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 RBM15BQ8NDT2 890 aaKnown RBP13.92□□□□□ -0.18
CLN3-255ENST00000637100 ASB10Q8WXI3 467 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 TIMD4Q96H15 378 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 DECR2Q9NUI1 292 aa13.92□□□□□ -0.18
CLN3-255ENST00000637100 CGGBP1Q9UFW8 167 aaPredicted RBP13.92□□□□□ -0.18
CLN3-255ENST00000637100 LOC100509620A0A075B734 347 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 CPSF4LA6NMK7 179 aaKnown RBP13.91□□□□□ -0.18
CLN3-255ENST00000637100 TRMUO75648 421 aaKnown RBP13.91□□□□□ -0.18
CLN3-255ENST00000637100 PRSS23O95084 383 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 ACADSP16219 412 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 MAKP20794 623 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 LIPAP38571 399 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 ZNF84P51523 738 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 FOXL1Q12952 345 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 ZNF718Q3SXZ3 478 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 PABPC1L2AQ5JQF8 200 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 FAM27BQ5VT28 67 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 SHISA2Q6UWI4 295 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 DOK3Q7L591 496 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 RETREG3Q86VR2 466 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 DEFB108BQ8NET1 73 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 NOXO1Q8NFA2 376 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 OR1J1Q8NGS3 322 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 ZBTB9Q96C00 473 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 C7orf69Q9H7B7 122 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 KAT8Q9H7Z6 458 aaKnown RBP13.91□□□□□ -0.18
CLN3-255ENST00000637100 TMBIM4Q9HC24 238 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 CYSLTR2Q9NS75 346 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 LEF1Q9UJU2 399 aaPredicted RBP13.91□□□□□ -0.18
CLN3-255ENST00000637100 SLC7A7Q9UM01 511 aa13.91□□□□□ -0.18
CLN3-255ENST00000637100 ZSCAN5BA6NJL1 495 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 MT-ND1P03886 318 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 HIST1H2ABP04908 130 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 FPR2P25090 351 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 STOMP27105 288 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 APLNRP35414 380 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 MPV17P39210 176 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 GZMMP51124 257 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 CLRN1P58418 232 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 RPL18Q07020 188 aaKnown RBP13.9□□□□□ -0.18
CLN3-255ENST00000637100 SLC3A1Q07837 685 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 SLC25A47Q6Q0C1 308 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 FOXL2NBQ6ZUU3 175 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 CCDC80Q76M96 950 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 HIST3H2AQ7L7L0 130 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 HDDC2Q7Z4H3 204 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 NANOGNBQ7Z5D8 188 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 PATL1Q86TB9 770 aaKnown RBP13.9□□□□□ -0.18
CLN3-255ENST00000637100 SLC30A8Q8IWU4 369 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 SYT14Q8NB59 555 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 KLF14Q8TD94 323 aaPredicted RBP13.9□□□□□ -0.18
CLN3-255ENST00000637100 TSPEARQ8WU66 669 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 IPCEF1Q8WWN9 437 aaPredicted RBP13.9□□□□□ -0.18
CLN3-255ENST00000637100 HIST1H2ACQ93077 130 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 POP5Q969H6 163 aaKnown RBP13.9□□□□□ -0.18
CLN3-255ENST00000637100 TAMM41Q96BW9 452 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 DIRC2Q96SL1 478 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 CGREF1Q99674 301 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 OR51B6Q9H340 312 aa13.9□□□□□ -0.18
CLN3-255ENST00000637100 STX18Q9P2W9 335 aaKnown RBP13.9□□□□□ -0.18
CLN3-255ENST00000637100 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.9□□□□□ -0.18
CLN3-255ENST00000637100 TGP01266 2768 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 ARHGAP32A7KAX9 2087 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 TANC2Q9HCD6 1990 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 IGKV1D-43A0A0B4J1Z2 117 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 OPN1SWP03999 348 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 ZNF32P17041 273 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 ZFP36P26651 326 aaKnown RBP13.89□□□□□ -0.19
CLN3-255ENST00000637100 PCGF2P35227 344 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 RBM34P42696 430 aaKnown RBP13.89□□□□□ -0.19
CLN3-255ENST00000637100 PSG4Q00888 419 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 SELPLGQ14242 412 aa13.89□□□□□ -0.19
CLN3-255ENST00000637100 TSTQ16762 297 aaKnown RBP13.89□□□□□ -0.19
CLN3-255ENST00000637100 AGKQ53H12 422 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms