RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CD8BP10966 210 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 ZNF708P17019 499 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 FGF9P31371 208 aaPredicted RBP14.99□□□□□ -0.01
CLN3-252ENST00000636907 PMP22Q01453 160 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 SRYQ05066 204 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 INSL4Q14641 139 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 SLC10A1Q14973 349 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 CDK5R1Q15078 307 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 SLC25A47Q6Q0C1 308 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 TMEM91Q6ZNR0 172 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 GLB1L2Q8IW92 636 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 MCHR2Q969V1 340 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 OR2M2Q96R28 347 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 ACKR4Q9NPB9 350 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 TIGARQ9NQ88 270 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 METTL15A6NJ78 407 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 ZNF716A6NP11 495 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 ABHD16AO95870 558 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 KRT8P05787 483 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 ZNF823P16415 610 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 CD53P19397 219 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 EDNRAP25101 427 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 EGR3Q06889 387 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 ABLIM2Q6H8Q1 611 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 SLC18B1Q6NT16 456 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 RPL22L1Q6P5R6 122 aaKnown RBP14.98□□□□□ -0.01
CLN3-252ENST00000636907 FAM220AQ7Z4H9 259 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 KCTD20Q7Z5Y7 419 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 YIPF7Q8N8F6 280 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 SNIP1Q8TAD8 396 aaKnown RBP14.98□□□□□ -0.01
CLN3-252ENST00000636907 ABTB1Q969K4 478 aaPredicted RBP14.98□□□□□ -0.01
CLN3-252ENST00000636907 CPNE4Q96A23 557 aaPredicted RBP14.98□□□□□ -0.01
CLN3-252ENST00000636907 RNF166Q96A37 237 aaPredicted RBP14.98□□□□□ -0.01
CLN3-252ENST00000636907 SMAD5Q99717 465 aaKnown RBP14.98□□□□□ -0.01
CLN3-252ENST00000636907 COQ7Q99807 217 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 DEFB127Q9H1M4 99 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 CCDC59Q9P031 241 aaKnown RBP14.98□□□□□ -0.01
CLN3-252ENST00000636907 KLHL9Q9P2J3 617 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 IKZF2Q9UKS7 526 aa14.98□□□□□ -0.01
CLN3-252ENST00000636907 UPK3AO75631 287 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 SULT1C4O75897 302 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 RGS9O75916 674 aaPredicted RBP14.97□□□□□ -0.01
CLN3-252ENST00000636907 ZNF432O94892 652 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 HRGP04196 525 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 QDPRP09417 244 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TACSTD2P09758 323 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 RPS19P39019 145 aaKnown RBP14.97□□□□□ -0.01
CLN3-252ENST00000636907 GDI2P50395 445 aaKnown RBP14.97□□□□□ -0.01
CLN3-252ENST00000636907 CCDC58Q4VC31 144 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 LRFN4Q6PJG9 635 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TMEM123Q8N131 208 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 MEIOBQ8N635 442 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 FNDC8Q8TC99 324 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 ZFAND2BQ8WV99 257 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 C11orf40Q8WZ69 217 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 GHSRQ92847 366 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TMEM54Q969K7 222 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 ZNF775Q96BV0 537 aaPredicted RBP14.97□□□□□ -0.01
CLN3-252ENST00000636907 SMIM19Q96E16 107 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 KCTD7Q96MP8 289 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 SLCO1C1Q9NYB5 712 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 GSTK1Q9Y2Q3 226 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 FLVCR1Q9Y5Y0 555 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TRAV17A0A0B4J275 112 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 A0A1W2PPL8 197 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 DVL2O14641 736 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 RPP14O95059 124 aaKnown RBP14.97□□□□□ -0.01
CLN3-252ENST00000636907 CDRT1O95170 752 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 LAP3P28838 519 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 CSNK1A1P48729 337 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TGM4P49221 684 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 SELENOPP49908 381 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 EIF2B1Q14232 305 aaKnown RBP14.97□□□□□ -0.01
CLN3-252ENST00000636907 PCK2Q16822 640 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TEX30Q5JUR7 227 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 PHYHD1Q5SRE7 291 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 LIPNQ5VXI9 398 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 FCRLAQ7L513 359 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 EGFL6Q8IUX8 553 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 ZNF454Q8N9F8 522 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 RPS4Y2Q8TD47 263 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 ASB17Q8WXJ9 295 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 DACH2Q96NX9 599 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 OR8B4Q96RC9 309 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TTYH2Q9BSA4 534 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 ABHD6Q9BV23 337 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 CDADC1Q9BWV3 514 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 ZDHHC11Q9H8X9 412 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 GALNT8Q9NY28 637 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 GLTPQ9NZD2 209 aa14.97□□□□□ -0.01
CLN3-252ENST00000636907 TRBV2A0A0J9YWF9 115 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 CYTIPO60759 359 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 SLC34A2O95436 690 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 WNT11O96014 354 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 ACTL6AO96019 429 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 GALP22466 123 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 NANOS3P60323 173 aaKnown RBP14.96□□□□□ -0.01
CLN3-252ENST00000636907 TRAM1Q15629 374 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 BCL2A1Q16548 175 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 LRRN1Q6UXK5 716 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms