RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 C3orf49Q96BT1 292 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 MRPS24Q96EL2 167 aaKnown RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 FKRPQ9H9S5 495 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 PIPOXQ9P0Z9 390 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 RPH3AQ9Y2J0 694 aaPredicted RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 R4GN57 208 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 H0YIG0 161 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 AIPO00170 330 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 RORAP35398 523 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 CAPZA2P47755 286 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 CCR9P51686 369 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 ALG10Q5BKT4 473 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 GSG1LQ6UXU4 331 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 DPY19L4Q7Z388 723 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 COMMD2Q86X83 199 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 DNAAF1Q8NEP3 725 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 DAZLQ92904 295 aaKnown RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 PELOQ9BRX2 385 aaKnown RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 UBQLN4Q9NRR5 601 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 GLS2Q9UI32 602 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 D6RAR5 112 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 EIF1AYO14602 144 aaKnown RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF35P13682 527 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 CDKN2AP42771 156 aaKnown RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 FASLGP48023 281 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 EMP2P54851 167 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 PITPNAQ00169 270 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC22A10Q63ZE4 541 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 ALKBH2Q6NS38 261 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 GID4Q8IVV7 300 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 OR52N1Q8NH53 320 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 METTL7AQ9H8H3 244 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 ALKBH4Q9NXW9 302 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 CLDN16Q9Y5I7 305 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 EFCAB7A8K855 629 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF264O43296 627 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 KLF4O43474 513 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 RLN2P04090 185 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 NRG3P56975 720 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 NXPH1P58417 271 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 FZD5Q13467 585 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 KLF9Q13886 244 aaPredicted RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 MEP1BQ16820 701 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 BEX5Q5H9J7 111 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 PDSS1Q5T2R2 415 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 PRAMEF20Q5VT98 475 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 OR1S1Q8NH92 325 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 DUSP15Q9H1R2 295 aaPredicted RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 ARRDC1-AS1Q9H2J1 176 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 MRPS18AQ9NVS2 196 aaKnown RBP13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 GRHPRQ9UBQ7 328 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 PRODH2Q9UF12 536 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 PISDQ9UG56 409 aa13.11□□□□□ -0.31
SHROOM1-208ENST00000617339 ACHEP22303 614 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 SEC61A1P61619 476 aaKnown RBP13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC25A30Q5SVS4 291 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 METTL11BQ5VVY1 283 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF649Q9BS31 505 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 DEFB126Q9BYW3 111 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 VN1R1Q9GZP7 353 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 ADGRL4Q9HBW9 690 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 A0A0G2JK05 382 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 C9J4A7 227 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 GOSR2O14653 212 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 CREBL2O60519 120 aaPredicted RBP13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 FGF2P09038 288 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 ADH7P40394 386 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 PSMD4P55036 377 aaKnown RBP13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 C2orf68Q2NKX9 166 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 LINC00303Q3SY05 128 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 TMPRSS11FQ6ZWK6 438 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 CMTM4Q8IZR5 234 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 LPAR4Q99677 370 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 ACTR6Q9GZN1 396 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 MED11Q9P086 117 aa13.1□□□□□ -0.31
SHROOM1-208ENST00000617339 LYPD3O95274 346 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 DCTDP32321 178 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 HSD17B7P56937 341 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC37A1P57057 533 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 FLI1Q01543 452 aaPredicted RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF85Q03923 595 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 AKIRIN2Q53H80 203 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 PM20D2Q8IYS1 436 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF615Q8N8J6 731 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 OR10K1Q8NGX5 313 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 BRIX1Q8TDN6 353 aaKnown RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 WDR76Q9H967 626 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 EDARQ9UNE0 448 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 PTRH2Q9Y3E5 179 aaKnown RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 MAS1P04201 325 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 MMP15P51511 669 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 ARFIP1P53367 373 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 CCL7P80098 99 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 IKZF1Q13422 519 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 ATXN7L3Q14CW9 347 aaPredicted RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 MANEAQ5SRI9 462 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 PPP1R3BQ86XI6 285 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 RNF113BQ8IZP6 322 aaKnown RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 STT3BQ8TCJ2 826 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms