RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MS4A18Q3C1V0 323 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 TMEM155Q4W5P6 130 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 AVPI1Q5T686 147 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 HHATQ5VTY9 493 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 NXNQ6DKJ4 435 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 ZNF613Q6PF04 617 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 BTNL3Q6UXE8 466 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 C17orf107Q6ZR85 190 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 C1orf229Q6ZS94 237 aaPredicted RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 SLC35D2Q76EJ3 337 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 ZNF771Q7L3S4 317 aaPredicted RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 LRP11Q86VZ4 500 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 CARM1Q86X55 608 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 SLC30A8Q8IWU4 369 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 SKA3Q8IX90 412 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 HIPK4Q8NE63 616 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 OR1J1Q8NGS3 322 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 VANGL1Q8TAA9 524 aaPredicted RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 RASSF5Q8WWW0 418 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 CCL17Q92583 94 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 DVL3Q92997 716 aaPredicted RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 TMEM54Q969K7 222 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 THOC1Q96FV9 657 aaKnown RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 TEX37Q96LM6 180 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 MS4A7Q9GZW8 240 aaPredicted RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 CENPHQ9H3R5 247 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 CCDC134Q9H6E4 229 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 UNKLQ9H9P5 680 aaKnown RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 NANOGQ9H9S0 305 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 SIAEQ9HAT2 523 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 SMURF2Q9HAU4 748 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 ELOVL3Q9HB03 270 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 BEX1Q9HBH7 125 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 CCNB1IP1Q9NPC3 277 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 SLCO1B3Q9NPD5 702 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 NANSQ9NR45 359 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 SDR39U1Q9NRG7 319 aaPredicted RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 TMEM38BQ9NVV0 291 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 UBAP1Q9NZ09 502 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 KIF17Q9P2E2 1029 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 OR5V1Q9UGF6 321 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 PURGQ9UJV8 347 aaKnown RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 ZNF229Q9UJW7 825 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 FZR1Q9UM11 496 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 POLR3KQ9Y2Y1 108 aaPredicted RBP5.35□□□□□ -1.55
CUX1-220ENST00000607092 PPIAL4AQ9Y536 164 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 MMP24Q9Y5R2 645 aa5.35□□□□□ -1.55
CUX1-220ENST00000607092 IGKV1D-42A0A075B6H8 117 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 A0A1W2PRG6 482 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 DNAJC9-AS1A6NH13 148 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NPIPB13A6NJU9 1138 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NPIPB4C9JG80 1138 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 M0QZ24 198 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 SDHDO14521 159 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 WNT9BO14905 357 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 TIMM23O14925 209 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 UBDO15205 165 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 RNF13O43567 381 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ITM2AO43736 263 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 CHP2O43745 196 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 SERPINI2O75830 405 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 HPRP00739 348 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 AVPP01185 164 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 BGLAPP02818 100 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 CRYBA1P05813 215 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 CD55P08174 381 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ALDOCP09972 364 aaKnown RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 GSTM3P21266 225 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 EPHA3P29320 983 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 GDI2P50395 445 aaKnown RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 AQP5P55064 265 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 CLRN1P58418 232 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 LCN2P80188 198 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 MRPS34P82930 218 aaKnown RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 CDK6Q00534 326 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 PDCD1Q15116 288 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 OR1Q1Q15612 314 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NPTX1Q15818 432 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 MSMPQ1L6U9 139 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 MIDNQ504T8 468 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ESCO2Q56NI9 601 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 RPS26P11Q5JNZ5 115 aaPredicted RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 GCNT6Q5T4J0 391 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 MBNL2Q5VZF2 373 aaKnown RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 SLC27A4Q6P1M0 643 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 C16orf87Q6PH81 154 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 TTC33Q6PID6 262 aaPredicted RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 LRRN1Q6UXK5 716 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NHLRC1Q6VVB1 395 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 C9orf139Q6ZV77 190 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NANOGNBQ7Z5D8 188 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ARMC8Q8IUR7 673 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ZNF584Q8IVC4 421 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 WDFY1Q8IWB7 410 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 SIGLECL1Q8N7X8 197 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NPEPL1Q8NDH3 523 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ICA1LQ8NDH6 482 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 OR4K5Q8NGD3 323 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 OR4F5Q8NH21 305 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 LRRC58Q96CX6 371 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms