RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 IFNGP01579 166 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 GLI4P10075 376 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 CLUP10909 449 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF3P17036 446 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 SLC2A5P22732 501 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 FMO3P31513 532 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 CEACAM8P31997 349 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 KIR2DL2P43627 348 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 SLC25A1P53007 311 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 NKX6-1P78426 367 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 LGALS3BPQ08380 585 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 FOXF2Q12947 444 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 ETFDHQ16134 617 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 TMEM201Q5SNT2 666 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 CARD17Q5XLA6 110 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 FAM205BPQ63HN1 556 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 NIPAL3Q6P499 406 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 PLBD1Q6P4A8 553 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 PAMR1Q6UXH9 720 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 AAED1Q7RTV5 226 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 P4HA3Q7Z4N8 544 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 JAZF1Q86VZ6 243 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 CDC20BQ86Y33 519 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 C20orf196Q8IYI0 205 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 OR6V1Q8N148 313 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 LILRB4Q8NHJ6 448 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 TMEM54Q969K7 222 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 GMPPAQ96IJ6 420 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 PLEKHA8Q96JA3 519 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 LRR1Q96L50 414 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 ADAD1Q96M93 576 aaKnown RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF582Q96NG8 517 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 SNX18Q96RF0 628 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 DMRTA2Q96SC8 542 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 VKORC1Q9BQB6 163 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 TTYH2Q9BSA4 534 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 NUAK2Q9H093 628 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 TP63Q9H3D4 680 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 GP6Q9HCN6 339 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 SRA1Q9HD15 236 aaKnown RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 KCNJ16Q9NPI9 418 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 GLRX2Q9NS18 164 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 ASB6Q9NWX5 421 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 DNAJC27Q9NZQ0 273 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 FOXD3Q9UJU5 478 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 B9D1Q9UPM9 204 aa8.32□□□□□ -1.08
TRIM28-208ENST00000597172 NOSIPQ9Y314 301 aaKnown RBP8.32□□□□□ -1.08
TRIM28-208ENST00000597172 CCDC182A6NF36 153 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 FAM90A27PA6NNH2 459 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 CENPBD1B2RD01 187 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 PRR23D1E9PI22 279 aaPredicted RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 XKRYO14609 159 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 SPRY1O43609 319 aaPredicted RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 AHCYL1O43865 530 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 MRPL33O75394 65 aaKnown RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 UPK3AO75631 287 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 IGHG1P01857 330 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 GYPBP06028 91 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 PRR23D2P0DMB1 279 aaPredicted RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 FCGR2AP12318 317 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 CTLA4P16410 223 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 SPI1P17947 270 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 AGTR1P30556 359 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 TIMP3P35625 211 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF133P52736 654 aaPredicted RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 TEKQ02763 1124 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 FMODQ06828 376 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 THEM4Q5T1C6 240 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 TSPO2Q5TGU0 170 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 MEDAGQ5VYS4 303 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 NXNL2Q5VZ03 156 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 SLC25A47Q6Q0C1 308 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 UGT2A3Q6UWM9 527 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 B3GLCTQ6Y288 498 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 MEPCEQ7L2J0 689 aaKnown RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 FAM214BQ7L5A3 538 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 LINGO2Q7L985 606 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 ADCK1Q86TW2 530 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 ZBTB46Q86UZ6 589 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 GCNT2Q8N0V5 402 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 NAXEQ8NCW5 288 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 OR51L1Q8NGJ5 315 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 OR9Q1Q8NGQ5 310 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 ASB5Q8WWX0 329 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 MCHR2Q969V1 340 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF566Q969W8 418 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 INTS12Q96CB8 462 aaKnown RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 TEAD3Q99594 435 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 TM9SF2Q99805 663 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 ALG12Q9BV10 488 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 PRRG3Q9BZD7 231 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 SYT4Q9H2B2 425 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 OR51V1Q9H2C8 321 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 AMBNQ9NP70 447 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 RPRD1BQ9NQG5 326 aaKnown RBP8.31□□□□□ -1.08
TRIM28-208ENST00000597172 PARPBPQ9NWS1 579 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 EMC3Q9P0I2 261 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 RCE1Q9Y256 329 aa8.31□□□□□ -1.08
TRIM28-208ENST00000597172 LRCH1Q9Y2L9 728 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms