RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	DDO	Q99489	341 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	ATF6B	Q99941	703 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	ZNF649	Q9BS31	505 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	REG4	Q9BYZ8	158 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	ACTR6	Q9GZN1	396 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	SDHAF3	Q9NRP4	125 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	SLCO1C1	Q9NYB5	712 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	PFDN2	Q9UHV9	154 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	FBXL2	Q9UKC9	423 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	VDAC3	Q9Y277	283 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	NPTN	Q9Y639	398 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	CNOT1	A5YKK6	2376 aa	Known RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	ZNF98	A6NK75	572 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318		A8MXK9	166 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	PRR23D1	E9PI22	279 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318		J3QRE1	110 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	SLC25A12	O75746	678 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	MPC2	O95563	127 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	SERPINA7	P05543	415 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	PRR23D2	P0DMB1	279 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	CLU	P10909	449 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	ZNF3	P17036	446 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	RPL4	P36578	427 aa	Known RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	RPL18	Q07020	188 aa	Known RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	NHLRC3	Q5JS37	347 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	FAM69A	Q5T7M9	428 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	C1orf140	Q5VVS0	124 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	B3GNTL1	Q67FW5	361 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	SIRT6	Q8N6T7	355 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	SDR9C7	Q8NEX9	313 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	OR52E2	Q8NGJ4	325 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	OR4K13	Q8NH42	304 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	POC1B	Q8TC44	478 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	PSMF1	Q92530	271 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	RFT1	Q96AA3	541 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	C7orf50	Q9BRJ6	194 aa	Known RBP	13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	FAM117A	Q9C073	453 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	KLHL1	Q9NR64	748 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	IL17B	Q9UHF5	180 aa		13.86	□□□□□ -0.19
DDX39A-209	ENST00000589318	SHISA8	B8ZZ34	492 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	CASK	O14936	926 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	EFNA2	O43921	213 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	HPGDS	O60760	199 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	IGHA1	P01876	353 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	LIMS3	P0CW19	117 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	LIMS4	P0CW20	117 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	SULT1A3	P0DMM9	295 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	SULT1A4	P0DMN0	295 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	FOSL1	P15407	271 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	APOBEC1	P41238	236 aa	Known RBP	13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	ERVK-25	P63136	954 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	GABRE	P78334	506 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	ALG10	Q5BKT4	473 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	BCL2L15	Q5TBC7	163 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	KRT74	Q7RTS7	529 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	TMPRSS12	Q86WS5	348 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	DND1	Q8IYX4	353 aa	Known RBP	13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	EIF4E3	Q8N5X7	224 aa	Known RBP	13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	CLRN3	Q8NCR9	226 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	NPEPL1	Q8NDH3	523 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	OR11H4	Q8NGC9	324 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	TM9SF4	Q92544	642 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	NKD1	Q969G9	470 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	RASD2	Q96D21	266 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	C1GALT1C1	Q96EU7	318 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	ANGPTL4	Q9BY76	406 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	HDHD2	Q9H0R4	259 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	TAS2R5	Q9NYW4	299 aa		13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	H2AFY2	Q9P0M6	372 aa	Predicted RBP	13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	SF3B6	Q9Y3B4	125 aa	Known RBP	13.85	□□□□□ -0.19
DDX39A-209	ENST00000589318	CDRT15L2	A8MXV6	281 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	FTCDNL1	E5RQL4	147 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	IMPA2	O14732	288 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	TM4SF5	O14894	197 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	GMDS	O60547	372 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	MT-ATP6	P00846	226 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	IFNG	P01579	166 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	CD14	P08571	375 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	APEH	P13798	732 aa	Known RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	AGFG1	P52594	562 aa	Known RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	BLVRA	P53004	296 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	P2RY14	Q15391	338 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	CRTC2	Q53ET0	693 aa	Predicted RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	TMEM156	Q8N614	296 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	ZNF485	Q8NCK3	441 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	ZPLD1	Q8TCW7	415 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	ADAMTS14	Q8WXS8	1223 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	KCTD12	Q96CX2	325 aa	Known RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	LINC00052	Q96N35	136 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	TEAD3	Q99594	435 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	WAC	Q9BTA9	647 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	RYDEN	Q9NUL5	291 aa	Known RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	SPIN1	Q9Y657	262 aa	Predicted RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	CACNG2	Q9Y698	323 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	TXNDC12	O95881	172 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	F13B	P05160	661 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	IL11	P20809	199 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	CSRP1	P21291	193 aa	Known RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	ZNF41	P51814	821 aa	Predicted RBP	13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms