RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SERPINA6P08185 405 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 CCNB1P14635 433 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 ELK1P19419 428 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 HNF1AP20823 631 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 PAICSP22234 425 aaKnown RBP3.62□□□□□ -1.83
NUP88-213ENST00000576862 PSMB6P28072 239 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 TNNC1P63316 161 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 FGL1Q08830 312 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 IL18R1Q13478 541 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 EIF2B1Q14232 305 aaKnown RBP3.62□□□□□ -1.83
NUP88-213ENST00000576862 VAMP3Q15836 100 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 UAP1Q16222 522 aaPredicted RBP3.62□□□□□ -1.83
NUP88-213ENST00000576862 PSG3Q16557 428 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 ACSF3Q4G176 576 aaPredicted RBP3.62□□□□□ -1.83
NUP88-213ENST00000576862 AGKQ53H12 422 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 C1orf94Q6P1W5 598 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 CCDC137Q6PK04 289 aaKnown RBP3.62□□□□□ -1.83
NUP88-213ENST00000576862 SYT10Q6XYQ8 523 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 C16orf62Q7Z3J2 963 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 SCD5Q86SK9 330 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 RBM45Q8IUH3 476 aaKnown RBP3.62□□□□□ -1.83
NUP88-213ENST00000576862 NELFCDQ8IXH7 590 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 DAW1Q8N136 415 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 OR5D13Q8NGL4 314 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 LINC01006Q8NI28 216 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 M1APQ8TC57 530 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 OTUB2Q96DC9 234 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 DPH7Q9BTV6 452 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 NDUFAF3Q9BU61 184 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 CHID1Q9BWS9 393 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 POTEKPQ9BYX7 375 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 ROPN1BQ9BZX4 212 aaPredicted RBP3.62□□□□□ -1.83
NUP88-213ENST00000576862 DRC3Q9H069 523 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 ASB8Q9H765 288 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 RDH8Q9NYR8 311 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 TAS2R7Q9NYW3 318 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 ADAM28Q9UKQ2 775 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 ABCG2Q9UNQ0 655 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 FOXJ3Q9UPW0 622 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 DHRS7Q9Y394 339 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 RHBDD3Q9Y3P4 386 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 PSME4Q14997 1843 aa3.62□□□□□ -1.83
NUP88-213ENST00000576862 MGAT4DA6NG13 374 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 A8MXQ7 604 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 E7ESA3 106 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 H0Y9J4 135 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 GOLGA8RI6L899 631 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 ABCD4O14678 606 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 DENRO43583 198 aaKnown RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 DUX1O43812 170 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 NOL4O94818 638 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 PNMA6AP0CW24 399 aaPredicted RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 NQO2P16083 231 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 CD40LGP29965 261 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 CASP14P31944 242 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 QARSP47897 775 aaKnown RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 SLC6A8P48029 635 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 STK19P49842 368 aaPredicted RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 KLK7P49862 253 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 RIPPLY3P57055 190 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 SEC61GP60059 68 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 FUT7Q11130 342 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 CARTPTQ16568 116 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 GLYR1Q49A26 553 aaPredicted RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 GPR157Q5UAW9 335 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 MFSD14CQ5VZR4 134 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 TMEM225Q6GV28 225 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 TMEM220Q6QAJ8 160 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 FAM122BQ7Z309 247 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 NUDCD3Q8IVD9 361 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 GTPBP8Q8N3Z3 284 aaPredicted RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 PQLC3Q8N755 202 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 CCDC112Q8NEF3 446 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 TTLQ8NG68 377 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 PNPT1Q8TCS8 783 aaKnown RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 RAET1EQ8TD07 263 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 DTX3LQ8TDB6 740 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 CAPSLQ8WWF8 208 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 ARNTL2Q8WYA1 636 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 SLC38A4Q969I6 547 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 TUBGCP2Q9BSJ2 902 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 C19orf24Q9BVV8 132 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 TM6SF2Q9BZW4 377 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 GOLPH3Q9H4A6 298 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 ZNF702PQ9H963 129 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 EXOSC3Q9NQT5 275 aaKnown RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 ZNF302Q9NR11 478 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 TREX1Q9NSU2 369 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 MTCH1Q9NZJ7 389 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 PSMC3IPQ9P2W1 217 aaPredicted RBP3.61□□□□□ -1.83
NUP88-213ENST00000576862 PISDQ9UG56 409 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 DCDC2Q9UHG0 476 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 GGA2Q9UJY4 613 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 RASD1Q9Y272 281 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 SRCAPQ6ZRS2 3230 aa3.61□□□□□ -1.83
NUP88-213ENST00000576862 CCL15-CCL14A0A0B4J2E2 113 aa3.6□□□□□ -1.83
NUP88-213ENST00000576862 TRBV7-9A0A0J9YWB2 115 aa3.6□□□□□ -1.83
NUP88-213ENST00000576862 LOC105371267A0A1B0GV96 52 aa3.6□□□□□ -1.83
NUP88-213ENST00000576862 GOLGA8JA6NMD2 632 aa3.6□□□□□ -1.83
NUP88-213ENST00000576862 SNTNA6NMZ2 147 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms