RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CNBD2Q96M20 576 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 VSTM2LQ96N03 204 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 DOK1Q99704 481 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 ABHD6Q9BV23 337 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CCDC32Q9BV29 185 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 TLNRD1Q9H1K6 362 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 FN3KQ9H479 309 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 DHX35Q9H5Z1 703 aaKnown RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 EGLN3Q9H6Z9 239 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 FKRPQ9H9S5 495 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 TAS2R13Q9NYV9 303 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 HHLA2Q9UM44 414 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 PRSS21Q9Y6M0 314 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CDH10Q9Y6N8 788 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 EPRSP07814 1512 aaKnown RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 PPRC1Q5VV67 1664 aaKnown RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 FLT4P35916 1363 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 REREQ9P2R6 1566 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 CUX1P39880 1505 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ZCWPW2A0A1B0GU75 182 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 A0A1W2PR80 420 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PSMB11A5LHX3 300 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 C1orf196B1AJZ1 125 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ANKRD63C9JTQ0 380 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 COPEO14579 308 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 SNAPC5O75971 98 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 SCGNO76038 276 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 NDUFB8O95169 186 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PAPSS2O95340 614 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 MT-ND4P03905 459 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 DCNP07585 359 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 SPP1P10451 314 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 MMP9P14780 707 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 IGFBP2P18065 325 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PMCHP20382 165 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 FUT3P21217 361 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TBXA2RP21731 343 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 AK4P27144 223 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 HTR2CP28335 458 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ADORA1P30542 326 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PNPLA4P41247 253 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 EVX1P49640 407 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 NAPAP54920 295 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TAS2R38P59533 333 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TAS2R41P59536 307 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ABCE1P61221 599 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 RRAS2P62070 204 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 BTN3A2P78410 334 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 CDKL1Q00532 357 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ZNF155Q12901 538 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 KIAA0141Q14154 515 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 FASTKQ14296 549 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 PSG5Q15238 335 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ZNF181Q2M3W8 571 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TCTEX1D4Q5JR98 221 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PIK3CD-AS1Q5SR53 167 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 FNBP1LQ5T0N5 605 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 SLC22A10Q63ZE4 541 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 SAXO2Q658L1 398 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 RUSC1-AS1Q66K80 236 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 STEAP4Q687X5 459 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TMEM42Q69YG0 159 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TMEM211Q6ICI0 200 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 OR2A2Q6IF42 318 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 FAM71E1Q6IPT2 247 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 FAHD1Q6P587 224 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 HAGHLQ6PII5 290 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 TMEM205Q6UW68 189 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 FAM198BQ6UWH4 519 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TMPRSS11AQ6ZMR5 421 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 H2BFWTQ7Z2G1 175 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 CROCCP2Q86T23 111 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 OR6V1Q8N148 313 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ZSCAN4Q8NAM6 433 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 OR2AP1Q8NGE2 309 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 CCDC107Q8WV48 283 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 SKA2Q8WVK7 121 aaPredicted RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 TNFAIP8L1Q8WVP5 186 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ACOT12Q8WYK0 555 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PIGCQ92535 297 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 SUSD6Q92537 303 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 TLCD1Q96CP7 247 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 MSI2Q96DH6 328 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 PABPC5Q96DU9 382 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 MARK4Q96L34 752 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ARHGDIGQ99819 225 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PPIL3Q9H2H8 161 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 MFSD1Q9H3U5 465 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 RPF2Q9H7B2 306 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 ELOVL3Q9HB03 270 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 BEX1Q9HBH7 125 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 LIN7CQ9NUP9 197 aaKnown RBP4.53□□□□□ -1.68
VPS35-205ENST00000563984 RASL12Q9NYN1 266 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 ZFP30Q9Y2G7 519 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 PPP2R2CQ9Y2T4 447 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 NAIPQ13075 1403 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 KIF21BO75037 1637 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 MYO5BQ9ULV0 1848 aa4.53□□□□□ -1.68
VPS35-205ENST00000563984 WDR81Q562E7 1941 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 KDM5DQ9BY66 1539 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms