RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 RBM45Q8IUH3 476 aaKnown RBP13.93□□□□□ -0.18
CLN3-208ENST00000561505 C11orf65Q8NCR3 313 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 STON2Q8WXE9 905 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 GTF3AQ92664 365 aaKnown RBP13.93□□□□□ -0.18
CLN3-208ENST00000561505 NABP1Q96AH0 204 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 LRRC58Q96CX6 371 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 ELMOD3Q96FG2 381 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 ZNF347Q96SE7 839 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 EBF4Q9BQW3 602 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 RNF121Q9H920 327 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 SAP30LQ9HAJ7 183 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 NTN4Q9HB63 628 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 NKIRAS1Q9NYS0 192 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 UGT2A1Q9Y4X1 527 aa13.93□□□□□ -0.18
CLN3-208ENST00000561505 TRRAPQ9Y4A5 3859 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 IQCMA0A1B0GVH7 501 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 H3BSA7 217 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 POLR3GO15318 223 aaPredicted RBP13.92□□□□□ -0.18
CLN3-208ENST00000561505 TMPRSS2O15393 492 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 RGS9O75916 674 aaPredicted RBP13.92□□□□□ -0.18
CLN3-208ENST00000561505 MT-ND5P03915 603 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 CD55P08174 381 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 WNT5AP41221 380 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 ZNF81P51508 661 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 CRYBA2P53672 197 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 ARMC4Q5T2S8 1044 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 ZNF101Q8IZC7 436 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 RBM15BQ8NDT2 890 aaKnown RBP13.92□□□□□ -0.18
CLN3-208ENST00000561505 ASB10Q8WXI3 467 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 TIMD4Q96H15 378 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 DECR2Q9NUI1 292 aa13.92□□□□□ -0.18
CLN3-208ENST00000561505 CGGBP1Q9UFW8 167 aaPredicted RBP13.92□□□□□ -0.18
CLN3-208ENST00000561505 LOC100509620A0A075B734 347 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 CPSF4LA6NMK7 179 aaKnown RBP13.91□□□□□ -0.18
CLN3-208ENST00000561505 TRMUO75648 421 aaKnown RBP13.91□□□□□ -0.18
CLN3-208ENST00000561505 PRSS23O95084 383 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 ACADSP16219 412 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 MAKP20794 623 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 LIPAP38571 399 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 ZNF84P51523 738 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 FOXL1Q12952 345 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 ZNF718Q3SXZ3 478 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 PABPC1L2AQ5JQF8 200 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 FAM27BQ5VT28 67 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 SHISA2Q6UWI4 295 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 DOK3Q7L591 496 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 RETREG3Q86VR2 466 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 DEFB108BQ8NET1 73 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 NOXO1Q8NFA2 376 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 OR1J1Q8NGS3 322 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 ZBTB9Q96C00 473 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 C7orf69Q9H7B7 122 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 KAT8Q9H7Z6 458 aaKnown RBP13.91□□□□□ -0.18
CLN3-208ENST00000561505 TMBIM4Q9HC24 238 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 CYSLTR2Q9NS75 346 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 LEF1Q9UJU2 399 aaPredicted RBP13.91□□□□□ -0.18
CLN3-208ENST00000561505 SLC7A7Q9UM01 511 aa13.91□□□□□ -0.18
CLN3-208ENST00000561505 ZSCAN5BA6NJL1 495 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 MT-ND1P03886 318 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 HIST1H2ABP04908 130 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 FPR2P25090 351 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 STOMP27105 288 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 APLNRP35414 380 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 MPV17P39210 176 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 GZMMP51124 257 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 CLRN1P58418 232 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 RPL18Q07020 188 aaKnown RBP13.9□□□□□ -0.18
CLN3-208ENST00000561505 SLC3A1Q07837 685 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 SLC25A47Q6Q0C1 308 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 FOXL2NBQ6ZUU3 175 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 CCDC80Q76M96 950 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 HIST3H2AQ7L7L0 130 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 HDDC2Q7Z4H3 204 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 NANOGNBQ7Z5D8 188 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 PATL1Q86TB9 770 aaKnown RBP13.9□□□□□ -0.18
CLN3-208ENST00000561505 SLC30A8Q8IWU4 369 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 SYT14Q8NB59 555 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 KLF14Q8TD94 323 aaPredicted RBP13.9□□□□□ -0.18
CLN3-208ENST00000561505 TSPEARQ8WU66 669 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 IPCEF1Q8WWN9 437 aaPredicted RBP13.9□□□□□ -0.18
CLN3-208ENST00000561505 HIST1H2ACQ93077 130 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 POP5Q969H6 163 aaKnown RBP13.9□□□□□ -0.18
CLN3-208ENST00000561505 TAMM41Q96BW9 452 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 DIRC2Q96SL1 478 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 CGREF1Q99674 301 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 OR51B6Q9H340 312 aa13.9□□□□□ -0.18
CLN3-208ENST00000561505 STX18Q9P2W9 335 aaKnown RBP13.9□□□□□ -0.18
CLN3-208ENST00000561505 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.9□□□□□ -0.18
CLN3-208ENST00000561505 ARHGAP32A7KAX9 2087 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 TANC2Q9HCD6 1990 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 IGKV1D-43A0A0B4J1Z2 117 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 OPN1SWP03999 348 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 ZNF32P17041 273 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 ZFP36P26651 326 aaKnown RBP13.89□□□□□ -0.19
CLN3-208ENST00000561505 PCGF2P35227 344 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 RBM34P42696 430 aaKnown RBP13.89□□□□□ -0.19
CLN3-208ENST00000561505 PSG4Q00888 419 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 SELPLGQ14242 412 aa13.89□□□□□ -0.19
CLN3-208ENST00000561505 TSTQ16762 297 aaKnown RBP13.89□□□□□ -0.19
CLN3-208ENST00000561505 AGKQ53H12 422 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms