RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DEFB113Q30KQ7 82 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 GPR139Q6DWJ6 353 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 SMARCD3Q6STE5 483 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 B3GLCTQ6Y288 498 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 DPY19L2P2Q6ZN68 376 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 AMIGO2Q86SJ2 522 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 MYPOPQ86VE0 399 aaPredicted RBP8.15□□□□□ -1.1
LDLR-211ENST00000560173 HIPK1Q86Z02 1210 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 LINC00471Q8N535 108 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 CLDN22Q8N7P3 220 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 OR9Q2Q8NGE9 314 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 GNPDA2Q8TDQ7 276 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 NRBF2Q96F24 287 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 Q96M85 177 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 FOXC2Q99958 501 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 SEMA6AQ9H2E6 1030 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 REEP1Q9H902 201 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 SEC61A2Q9H9S3 476 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 NOX3Q9HBY0 568 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 NRIP3Q9NQ35 241 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 B3GNT2Q9NY97 397 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 ZNF224Q9NZL3 707 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 IL20RAQ9UHF4 553 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 SCOCQ9UIL1 159 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 SAMHD1Q9Y3Z3 626 aaKnown RBP8.15□□□□□ -1.1
LDLR-211ENST00000560173 ORC6Q9Y5N6 252 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 ACANP16112 2415 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 DSCAMO60469 2012 aa8.15□□□□□ -1.11
LDLR-211ENST00000560173 TEX13CA0A0J9YWL9 993 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 E7EQL1 145 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 ATP6V1G2-DDX39BF2Z307 99 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 H7C1C5 153 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 TXNDC12O95881 172 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 CELA3BP08861 270 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 DANCRP0C864 163 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 OR8G3PP0DMU2 310 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 APEHP13798 732 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 ZNF23P17027 643 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 SDHAP31040 664 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 ARR3P36575 388 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 CAPZA2P47755 286 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 ZNF84P51523 738 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 IDH3GP51553 393 aaPredicted RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 RPS6KA3P51812 740 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 ART1P52961 327 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 LCN6P62502 163 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 MRPS34P82930 218 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 PPP1R8Q12972 351 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 TSPAN31Q12999 210 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 KRR1Q13601 381 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 GSG1Q2KHT4 349 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 NRN1LQ496H8 165 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 MESTQ5EB52 335 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 THEM4Q5T1C6 240 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 SLC25A47Q6Q0C1 308 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 SLC22A25Q6T423 547 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 ZNF620Q6ZNG0 422 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 SKA3Q8IX90 412 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 PIAS4Q8N2W9 510 aaPredicted RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 GALNT4Q8N4A0 578 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 SLC22A24Q8N4F4 322 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 OR5K1Q8NHB7 308 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 FNDC8Q8TC99 324 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 NANOS1Q8WY41 292 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 HTRA1Q92743 480 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 PIGTQ969N2 578 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 FBXW5Q969U6 566 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 NABP1Q96AH0 204 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 RASD2Q96D21 266 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 RBP7Q96R05 134 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 CCL19Q99731 98 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 CIB1Q99828 191 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 RBM4BQ9BQ04 359 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 RBM4Q9BWF3 364 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 CXXC4Q9H2H0 198 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 OR52D1Q9H346 318 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 BEX4Q9NWD9 120 aaPredicted RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 GRHPRQ9UBQ7 328 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 OAZ3Q9UMX2 235 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 CDH10Q9Y6N8 788 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 U3KQV3 271 aa8.14□□□□□ -1.11
LDLR-211ENST00000560173 HEATR1Q9H583 2144 aaKnown RBP8.14□□□□□ -1.11
LDLR-211ENST00000560173 SLC22A23A1A5C7 686 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 PRSS37A4D1T9 235 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 G3V2T6 193 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 H0YAE9 185 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 XKRYO14609 159 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ARPC3O15145 178 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ARHGEF9O43307 516 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 AHCYL1O43865 530 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 E2F6O75461 281 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 UBL3O95164 117 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 FARS2O95363 451 aaKnown RBP8.13□□□□□ -1.11
LDLR-211ENST00000560173 PPP1R3DO95685 299 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 SOD3P08294 240 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 PATE4P0C8F1 98 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 CD79AP11912 226 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ZNF14P17017 642 aaPredicted RBP8.13□□□□□ -1.11
LDLR-211ENST00000560173 CALCRP30988 508 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 SLC6A6P31641 620 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms