RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 NPIPA5E9PKD4 350 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 OR2T1O43869 369 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 ITGA10O75578 1167 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 ZFAND5O76080 213 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 UBL3O95164 117 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 DPP4P27487 766 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 SFRP4Q6FHJ7 346 aaPredicted RBP9.53□□□□□ -0.88
CUX1-217ENST00000558836 LRFN4Q6PJG9 635 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 KCTD20Q7Z5Y7 419 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 RPS4Y2Q8TD47 263 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 RASL10BQ96S79 203 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 COMMD4Q9H0A8 199 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 NPIPA1Q9UND3 350 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 PTRH2Q9Y3E5 179 aaKnown RBP9.53□□□□□ -0.88
CUX1-217ENST00000558836 LOC101059948A0A1B0GTJ6 334 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 ANXA2P2A6NMY6 339 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 ANXA2P07355 339 aaKnown RBP9.52□□□□□ -0.88
CUX1-217ENST00000558836 PTGDSP41222 190 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 ZNF41P51814 821 aaPredicted RBP9.52□□□□□ -0.88
CUX1-217ENST00000558836 MYBPHQ13203 477 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 SLC17A1Q14916 467 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 PLA1AQ53H76 456 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 CARD17Q5XLA6 110 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 PLPP7Q8NBV4 271 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 OR5L2Q8NGL0 311 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 ZC3HAV1LQ96H79 300 aaKnown RBP9.52□□□□□ -0.88
CUX1-217ENST00000558836 C4orf45Q96LM5 186 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 OR8B4Q96RC9 309 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 CENPMQ9NSP4 180 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 MRPL39Q9NYK5 338 aaKnown RBP9.52□□□□□ -0.88
CUX1-217ENST00000558836 TMEM14AQ9Y6G1 99 aa9.52□□□□□ -0.88
CUX1-217ENST00000558836 A0A0A6YYJ9 748 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 ZNF814B7Z6K7 855 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 ORC5O43913 435 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 RAMP1O60894 148 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 TRIM3O75382 744 aaPredicted RBP9.52□□□□□ -0.89
CUX1-217ENST00000558836 GSTT2P0CG29 244 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 GSTT2BP0CG30 244 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 BIDP55957 195 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 GLO1Q04760 184 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 EGR3Q06889 387 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 TMEM255AQ5JRV8 349 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 UBE2NLQ5JXB2 153 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 SLC18B1Q6NT16 456 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 MRPL14Q6P1L8 145 aaKnown RBP9.52□□□□□ -0.89
CUX1-217ENST00000558836 H1FNTQ75WM6 255 aaPredicted RBP9.52□□□□□ -0.89
CUX1-217ENST00000558836 NUP54Q7Z3B4 507 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 DCXRQ7Z4W1 244 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 OR52I2Q8NH67 350 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 POC1BQ8TC44 478 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 STK35Q8TDR2 534 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 SLC39A7Q92504 469 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 NAT6Q93015 286 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 DACT3Q96B18 629 aaPredicted RBP9.52□□□□□ -0.89
CUX1-217ENST00000558836 DCBLD2Q96PD2 775 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 EMC9Q9Y3B6 208 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 LRP12Q9Y561 859 aa9.52□□□□□ -0.89
CUX1-217ENST00000558836 PMS2P1A4D2B8 440 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 D6RAR5 112 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 LMX1BO60663 402 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 TDGF1P13385 188 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 GDNFP39905 211 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 MMP15P51511 669 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 EFNB2P52799 333 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 HSF1Q00613 529 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 CAMK2DQ13557 499 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 LYPD8Q6UX82 237 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 NDUFAF7Q7L592 441 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 LRRTM1Q86UE6 522 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 C1orf210Q8IVY1 113 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 ZNF679Q8IYX0 411 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 HAVCR2Q8TDQ0 301 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 GPR148Q8TDV2 347 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 JSRP1Q96MG2 331 aaPredicted RBP9.51□□□□□ -0.89
CUX1-217ENST00000558836 OR5B2Q96R09 309 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 SLITRK2Q9H156 845 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 VSX1Q9NZR4 365 aaPredicted RBP9.51□□□□□ -0.89
CUX1-217ENST00000558836 RCE1Q9Y256 329 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 ZFHX4Q86UP3 3567 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 C19orf67A6NJJ6 358 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 PDCD5O14737 125 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 GMDSO60547 372 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 CD1AP06126 327 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 CDK2P24941 298 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 APOBEC1P41238 236 aaKnown RBP9.51□□□□□ -0.89
CUX1-217ENST00000558836 SNTB2Q13425 540 aaKnown RBP9.51□□□□□ -0.89
CUX1-217ENST00000558836 PLPPR5Q32ZL2 321 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 ASPHD2Q6ICH7 369 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 TMEM205Q6UW68 189 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 WDR5BQ86VZ2 330 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 OR51D1Q8NGF3 324 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 ASB10Q8WXI3 467 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 ST8SIA1Q92185 356 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 MS4A3Q96HJ5 214 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 GNRHR2Q96P88 292 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 CACNG6Q9BXT2 260 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 FLVCR2Q9UPI3 526 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 CAMK2AQ9UQM7 478 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 WIF1Q9Y5W5 379 aa9.51□□□□□ -0.89
CUX1-217ENST00000558836 EP300Q09472 2414 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms