RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ALPK2Q86TB3 2170 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 UNC119BA6NIH7 251 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 PRODHO43272 600 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 NTN1O95631 604 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 HMGN1P05114 100 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 PRKCAP17252 672 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 SRD5A1P18405 259 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 GRK5P34947 590 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 LIPAP38571 399 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.02□□□□□ -0.65
SHMT2-230ENST00000557427 CBFBQ13951 182 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 QPRTQ15274 297 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 PGGHGQ32M88 737 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 KLHL22Q53GT1 634 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 WDR88Q6ZMY6 472 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 ESPNLQ6ZVH7 1005 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 MEX3DQ86XN8 651 aaKnown RBP11.02□□□□□ -0.65
SHMT2-230ENST00000557427 CDK20Q8IZL9 346 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 SLC43A2Q8N370 569 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 OR4Q3Q8NH05 313 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 TBC1D15Q8TC07 691 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 PLPPR2Q96GM1 343 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 C1orf159Q96HA4 380 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 ADGRG7Q96K78 797 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 LRR1Q96L50 414 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 KLHL15Q96M94 604 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 TNFRSF13CQ96RJ3 184 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 ZNF426Q9BUY5 554 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 FGF20Q9NP95 211 aaPredicted RBP11.02□□□□□ -0.65
SHMT2-230ENST00000557427 MCTS1Q9ULC4 181 aaKnown RBP11.02□□□□□ -0.65
SHMT2-230ENST00000557427 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.02□□□□□ -0.65
SHMT2-230ENST00000557427 PROCRQ9UNN8 238 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 DIMT1Q9UNQ2 313 aaKnown RBP11.02□□□□□ -0.65
SHMT2-230ENST00000557427 SLC35A3Q9Y2D2 325 aa11.02□□□□□ -0.65
SHMT2-230ENST00000557427 MALRD1Q5VYJ5 2156 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 A0A1B0GWA3 101 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 SURF4O15260 269 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 CLPXO76031 633 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 RAB36O95755 333 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 IFI30P13284 250 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 SUMO3P55854 103 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-230ENST00000557427 DCTN2Q13561 401 aaKnown RBP11.01□□□□□ -0.65
SHMT2-230ENST00000557427 MOGQ16653 247 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 PDLIM3Q53GG5 364 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-230ENST00000557427 LINC00114Q6XXX2 140 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 FAM214BQ7L5A3 538 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 FAM71CQ8NEG0 241 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 OR2T33Q8NG76 320 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 MND1Q9BWT6 205 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 PLGRKTQ9HBL7 147 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 PAQR5Q9NXK6 330 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-230ENST00000557427 ERGIC3Q9Y282 383 aa11.01□□□□□ -0.65
SHMT2-230ENST00000557427 LSM2Q9Y333 95 aaKnown RBP11.01□□□□□ -0.65
SHMT2-230ENST00000557427 A0A1W2PNR3 127 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 HTR3EA5X5Y0 456 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 M0R3G1 203 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 CDC42EP2O14613 210 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 AIREO43918 545 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 ADRA2AP08913 450 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 FCGR2AP12318 317 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 MAKP20794 623 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 NR4A1P22736 598 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 ADH6P28332 368 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 SERPINB10P48595 397 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 RGS6P49758 472 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 RAB40BQ12829 278 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 SKP2Q13309 424 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 DGUOKQ16854 277 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 ARMCX4Q5H9R4 360 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 ADAM5Q6NVV9 412 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 ULK3Q6PHR2 472 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 NANOGP1Q8N7R0 232 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 ANKK1Q8NFD2 765 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 PROKR2Q8NFJ6 384 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 OR10H5Q8NGA6 315 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 OR52L1Q8NGH7 329 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 OR52I1Q8NGK6 324 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 ZNF563Q8TA94 476 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 DYNC2LI1Q8TCX1 351 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 NEUROG1Q92886 237 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 RFKQ969G6 155 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 BPIFA2Q96DR5 249 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 LGALS12Q96DT0 336 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 PLEKHA8Q96JA3 519 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 MRGPRX4Q96LA9 322 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 SAMD8Q96LT4 415 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 MGLLQ99685 303 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 SRXN1Q9BYN0 137 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 OR52D1Q9H346 318 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 FN3KQ9H479 309 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 TIGARQ9NQ88 270 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 EXOSC3Q9NQT5 275 aaKnown RBP11□□□□□ -0.65
SHMT2-230ENST00000557427 EMC9Q9Y3B6 208 aa11□□□□□ -0.65
SHMT2-230ENST00000557427 IGHV3-15A0A0B4J1V0 119 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 SLC35F4A4IF30 521 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 GJE1A6NN92 205 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 EFCAB9A8MZ26 197 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 LMX1BO60663 402 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 IGHV4-31P0DP07 118 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 ZNF16P17020 682 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms