RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TRIM40Q6P9F5 258 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 OTUD6AQ7L8S5 288 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 ZNF321PQ8N8H1 164 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 FBXL13Q8NEE6 735 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 GPR151Q8TDV0 419 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 ACOT11Q8WXI4 607 aaPredicted RBP2.61□□□□□ -1.99
SCFD1-221ENST00000556534 ATP5SQ99766 215 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 RIOK1Q9BRS2 568 aaKnown RBP2.61□□□□□ -1.99
SCFD1-221ENST00000556534 RIOK2Q9BVS4 552 aaKnown RBP2.61□□□□□ -1.99
SCFD1-221ENST00000556534 ANKRD60Q9BZ19 345 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 CWH43Q9H720 699 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 UGT1A10Q9HAW8 530 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 FGF20Q9NP95 211 aaPredicted RBP2.61□□□□□ -1.99
SCFD1-221ENST00000556534 LHX9Q9NQ69 397 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 ZNF226Q9NYT6 803 aa2.61□□□□□ -1.99
SCFD1-221ENST00000556534 ARPC4-TTLL3A0A0A6YYG9 625 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 C12orf71A8MTZ7 269 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SPECC1L-ADORA2AF8WAN1 911 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 GOLGA8TH3BQL2 631 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 CCL21O00585 134 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 KRTAP5-8O75690 187 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 IGLV2-23P01705 113 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 ERCC1P07992 297 aaPredicted RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 TBPP20226 339 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 GSTM3P21266 225 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 CXCL5P42830 114 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 CDKN1BP46527 198 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 NPBWR2P48146 333 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 TMED10P49755 219 aaKnown RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 CCNHP51946 323 aaPredicted RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 GPX6P59796 221 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 MRPS22P82650 360 aaKnown RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 LIPEQ05469 1076 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SLAQ13239 276 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 DOC2AQ14183 400 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 RSPO1Q2MKA7 263 aaPredicted RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 RFX4Q33E94 735 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SOHLH1Q5JUK2 328 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 GABRG1Q8N1C3 465 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 OR4A4PQ8NGN8 299 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 FGF14Q92915 247 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SMARCD2Q92925 531 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 ISG20Q96AZ6 181 aaKnown RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 LRRC58Q96CX6 371 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 ASB9Q96DX5 294 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 FOPNLQ96NB1 174 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 TAAR1Q96RJ0 339 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SORT1Q99523 831 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SLC29A1Q99808 456 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SH3GL1Q99961 368 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 SCRT1Q9BWW7 348 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 TEKT3Q9BXF9 490 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 DNTTIP1Q9H147 329 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 RANBP3Q9H6Z4 567 aaPredicted RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 LYRM4Q9HD34 91 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 ADAP2Q9NPF8 381 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 IL26Q9NPH9 171 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 C20orf96Q9NUD7 363 aaPredicted RBP2.6□□□□□ -1.99
SCFD1-221ENST00000556534 AHSPQ9NZD4 102 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 KCNIP1Q9NZI2 227 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 HEBP2Q9Y5Z4 205 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 USP47Q96K76 1375 aa2.6□□□□□ -1.99
SCFD1-221ENST00000556534 IGLV4-60A0A075B6I1 120 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 FGGP02679 453 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 RETP07949 1114 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 POLR2MP0CAP2 368 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 STOMP27105 288 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 DCKP27707 260 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 GTF2E2P29084 291 aaKnown RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 HSD17B2P37059 387 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 SLC26A3P40879 764 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 PMELP40967 661 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 NAA10P41227 235 aaPredicted RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 TNNT2P45379 298 aaPredicted RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 UQCRFS1P47985 274 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 RAB10P61026 200 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 PDIA2Q13087 525 aaKnown RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 KLHL40Q2TBA0 621 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 DEFB116Q30KQ4 102 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 HSDL1Q3SXM5 330 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 HIKESHIQ53FT3 197 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 VAX1Q5SQQ9 334 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 REEP3Q6NUK4 255 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 ANGPTL8Q6UXH0 198 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 SSX9Q7RTT3 188 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 SLC16A14Q7RTX9 510 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 PUSL1Q8N0Z8 303 aaKnown RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 ZNF557Q8N988 423 aaPredicted RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 FAM184AQ8NB25 1140 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 OR52K1Q8NGK4 314 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 GLYATL2Q8WU03 294 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 DUS3LQ96G46 650 aaKnown RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 PRRC1Q96M27 445 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 GBA3Q9H227 469 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 ELOVL6Q9H5J4 265 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 CLMPQ9H6B4 373 aa2.59□□□□□ -1.99
SCFD1-221ENST00000556534 MRPS30Q9NP92 439 aaKnown RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 PEF1Q9UBV8 284 aaKnown RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 ZNF282Q9UDV7 671 aaPredicted RBP2.59□□□□□ -1.99
SCFD1-221ENST00000556534 LSM7Q9UK45 103 aaKnown RBP2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms