RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TNFRSF1AP19438 455 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 BGNP21810 368 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 PPIBP23284 216 aaKnown RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 GDI2P50395 445 aaKnown RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 CDH12P55289 794 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 TNFAIP6P98066 277 aaPredicted RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 GTDC1Q4AE62 458 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 KLF17Q5JT82 389 aaPredicted RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 GCNT6Q5T4J0 391 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 HHATQ5VTY9 493 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 MBNL2Q5VZF2 373 aaKnown RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 ARL9Q6T311 187 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 BTNL3Q6UXE8 466 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 LRRC18Q8N456 261 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 GOLGA6L1Q8N7Z2 621 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 NFKBIDQ8NI38 313 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 IPCEF1Q8WWN9 437 aaPredicted RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 ZNF48Q96MX3 618 aaPredicted RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 DCLRE1CQ96SD1 692 aaKnown RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 WDR55Q9H6Y2 383 aaPredicted RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 SSU72Q9NP77 194 aaKnown RBP14.29□□□□□ -0.12
VPS29-204ENST00000548259 EGFL7Q9UHF1 273 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 TRIM33Q9UPN9 1127 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 C5orf49A4QMS7 147 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 MCIDASD6RGH6 385 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 ZNF500O60304 480 aaPredicted RBP14.28□□□□□ -0.12
VPS29-204ENST00000548259 IGHV2-70P01814 119 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 CD55P08174 381 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 PGA4P0DJD7 388 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 PGA3P0DJD8 388 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 CPT2P23786 658 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 SLC6A9P48067 706 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 POLR2JP52435 117 aaKnown RBP14.28□□□□□ -0.12
VPS29-204ENST00000548259 ARHGDIAP52565 204 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 CDK6Q00534 326 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 MELKQ14680 651 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 PABPC1L2AQ5JQF8 200 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 SPATA46Q5T0L3 261 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 ZNF613Q6PF04 617 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 BRICD5Q6PL45 260 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 C9orf139Q6ZV77 190 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 ALDH16A1Q8IZ83 802 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 PARP8Q8N3A8 854 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 KLF14Q8TD94 323 aaPredicted RBP14.28□□□□□ -0.12
VPS29-204ENST00000548259 UBE2FQ969M7 185 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 ZDHHC16Q969W1 377 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 MARS2Q96GW9 593 aaKnown RBP14.28□□□□□ -0.12
VPS29-204ENST00000548259 SIAEQ9HAT2 523 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 ELOVL3Q9HB03 270 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 NPHS2Q9NP85 383 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 TMEM106BQ9NUM4 274 aa14.28□□□□□ -0.12
VPS29-204ENST00000548259 STX18Q9P2W9 335 aaKnown RBP14.28□□□□□ -0.12
VPS29-204ENST00000548259 A0A1W2PRG6 482 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 ZSCAN5BA6NJL1 495 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 A8MXK9 166 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 CENPBD1B2RD01 187 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 TRAPPC2LH3BP13 241 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 SURF4O15260 269 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 RGS16O15492 202 aaPredicted RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 CHP2O43745 196 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 TIMM8AO60220 97 aaPredicted RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 TGDSO95455 350 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 GPANK1O95872 356 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 NR2C1P13056 603 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 OMGP23515 440 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 SLC6A2P23975 617 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 BTG1P62324 171 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 FAM205BPQ63HN1 556 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 TTC33Q6PID6 262 aaPredicted RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 LRRN1Q6UXK5 716 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 ARMC8Q8IUR7 673 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 MUC20Q8N307 709 aaPredicted RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 SLC25A40Q8TBP6 338 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 GEMIN6Q8WXD5 167 aaKnown RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 GTF2H4Q92759 462 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 MCHR2Q969V1 340 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 THOC1Q96FV9 657 aaKnown RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 PAIP2Q9BPZ3 127 aaKnown RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 OR2J1Q9GZK6 312 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 SLCO1B3Q9NPD5 702 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 SDR39U1Q9NRG7 319 aaPredicted RBP14.27□□□□□ -0.13
VPS29-204ENST00000548259 TAS2R5Q9NYW4 299 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 ZNF229Q9UJW7 825 aa14.27□□□□□ -0.13
VPS29-204ENST00000548259 GMNCA6NCL1 334 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 FMO6PO60774 539 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 CH25HO95992 272 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 MMP7P09237 267 aaPredicted RBP14.26□□□□□ -0.13
VPS29-204ENST00000548259 UMPSP11172 480 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 MPV17P39210 176 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 GUCA1AP43080 201 aaPredicted RBP14.26□□□□□ -0.13
VPS29-204ENST00000548259 PPP1CBP62140 327 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 BST1Q10588 318 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 ZNF74Q16587 644 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 KRT71Q3SY84 523 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 MTX3Q5HYI7 312 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 NANOGNBQ7Z5D8 188 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 LRRC28Q86X40 367 aaPredicted RBP14.26□□□□□ -0.13
VPS29-204ENST00000548259 ABHD4Q8TB40 342 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 WFDC12Q8WWY7 111 aa14.26□□□□□ -0.13
VPS29-204ENST00000548259 MCHR1Q99705 422 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms