RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ZAR1LA6NP61 321 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 PRR23D1E9PI22 279 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 H0YJX3 145 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC16A7O60669 478 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 TMCC2O75069 709 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 HRGP04196 525 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 PRR23D2P0DMB1 279 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 MSR1P21757 451 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 LAP3P28838 519 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 ARR3P36575 388 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 CDKN2AP42771 156 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 LSM6P62312 80 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 SNAPC1Q16533 368 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC35F1Q5T1Q4 408 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 FAM27BQ5VT28 67 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 SLX4IPQ5VYV7 408 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 FOXL2NBQ6ZUU3 175 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 DEPDC4Q8N2C3 294 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC22A24Q8N4F4 322 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 NPEPL1Q8NDH3 523 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 ZNF555Q8NEP9 628 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 RADILQ96JH8 1075 aa15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 ESRP2Q9H6T0 727 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 SMPD3Q9NY59 655 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 H2AFY2Q9P0M6 372 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-210ENST00000540931 C12orf71A8MTZ7 269 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 SURF4O15260 269 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 PRODHO43272 600 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 CRYGSP22914 178 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 BEX5Q5H9J7 111 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC35D3Q5M8T2 416 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 PHYHD1Q5SRE7 291 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 OGFRL1Q5TC84 451 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 TTC23Q5W5X9 447 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 TMEM53Q6P2H8 277 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 PTCHD4Q6ZW05 846 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 LINGO2Q7L985 606 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 SDR9C7Q8NEX9 313 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 OR8J1Q8NGP2 316 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 OR4Q3Q8NH05 313 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 HRASLS5Q96KN8 279 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 WFIKKN1Q96NZ8 548 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 NUAK2Q9H093 628 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 RIBC2Q9H4K1 309 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 SEC61A2Q9H9S3 476 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 RPRD1BQ9NQG5 326 aaKnown RBP15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 B9D1Q9UPM9 204 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 RRP15Q9Y3B9 282 aaKnown RBP15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 CSMD1Q96PZ7 3565 aa15.35■□□□□ 0.05
CLSTN3-210ENST00000540931 CST2P09228 141 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 PTAFRP25105 342 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 FMO3P31513 532 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 CCKARP32238 428 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 HSF2Q03933 536 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 PLP2Q04941 152 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 TAB1Q15750 504 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 KCNMB1Q16558 191 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 C9orf135Q5VTT2 229 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 TMEM108Q6UXF1 575 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC16A14Q7RTX9 510 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 ALDH16A1Q8IZ83 802 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC37A3Q8NCC5 494 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 PROKR2Q8NFJ6 384 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 OR10H5Q8NGA6 315 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 IPCEF1Q8WWN9 437 aaPredicted RBP15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 NSMAFQ92636 917 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 C14orf79Q96F83 325 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 GRIP2Q9C0E4 1043 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 CCNB1IP1Q9NPC3 277 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 IMPAD1Q9NX62 359 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 TVP23BQ9NYZ1 205 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 SLC25A15Q9Y619 301 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 ALPK2Q86TB3 2170 aa15.34■□□□□ 0.05
CLSTN3-210ENST00000540931 A0A1W2PPL8 197 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 OR6C68A6NDL8 312 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 MITFO75030 526 aaPredicted RBP15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 SLC2A10O95528 541 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 RAB36O95755 333 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 B4GALT1P15291 398 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 CBR1P16152 277 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 CTLA4P16410 223 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 GRNP28799 593 aaKnown RBP15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 SSTR2P30874 369 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 CAPZA2P47755 286 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 FMODQ06828 376 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 TMED1Q13445 227 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 KEAP1Q14145 624 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 GSG1Q2KHT4 349 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 ZNF362Q5T0B9 420 aaPredicted RBP15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 LCN1P1Q5VSP4 162 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 C12orf73Q69YU5 71 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 ACSM5Q6NUN0 579 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 GID4Q8IVV7 300 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 RFKQ969G6 155 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 DDOQ99489 341 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 APOL4Q9BPW4 351 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 NMNAT2Q9BZQ4 307 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 SRA1Q9HD15 236 aaKnown RBP15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 POLE4Q9NR33 117 aa15.33■□□□□ 0.04
CLSTN3-210ENST00000540931 CRIM1Q9NZV1 1036 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms