RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ATE1O95260 518 aa18.84■□□□□ 0.61
VPS28-212ENST00000530836 HRGP04196 525 aa18.84■□□□□ 0.61
VPS28-212ENST00000530836 CLDN17P56750 224 aa18.84■□□□□ 0.61
VPS28-212ENST00000530836 HIST3H3Q16695 136 aa18.84■□□□□ 0.61
VPS28-212ENST00000530836 ZNF324BQ6AW86 544 aaPredicted RBP18.84■□□□□ 0.61
VPS28-212ENST00000530836 TRILQ7L0X0 811 aa18.84■□□□□ 0.61
VPS28-212ENST00000530836 RCE1Q9Y256 329 aa18.84■□□□□ 0.61
VPS28-212ENST00000530836 FREM3P0C091 2139 aa18.84■□□□□ 0.61
VPS28-212ENST00000530836 IGHV3-15A0A0B4J1V0 119 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 TFECO14948 347 aaPredicted RBP18.83■□□□□ 0.61
VPS28-212ENST00000530836 ZNF24P17028 368 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 CD53P19397 219 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 GADD45AP24522 165 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 PTGS2P35354 604 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 MRPL28Q13084 256 aaKnown RBP18.83■□□□□ 0.61
VPS28-212ENST00000530836 CAMK2DQ13557 499 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 RNFT1Q5M7Z0 435 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 LIPKQ5VXJ0 399 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 VASNQ6EMK4 673 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 PLEKHG7Q6ZR37 379 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 VASH1Q7L8A9 365 aaPredicted RBP18.83■□□□□ 0.61
VPS28-212ENST00000530836 KLBQ86Z14 1044 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 OR6N2Q8NGY6 317 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 ASB17Q8WXJ9 295 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 C4orf36Q96KX1 117 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 TSC22D3Q99576 134 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 ISG20L2Q9H9L3 353 aaKnown RBP18.83■□□□□ 0.61
VPS28-212ENST00000530836 LAMP5Q9UJQ1 280 aa18.83■□□□□ 0.61
VPS28-212ENST00000530836 COA3Q9Y2R0 106 aaPredicted RBP18.83■□□□□ 0.61
VPS28-212ENST00000530836 CYTIPO60759 359 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 SYNGR4O95473 234 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 TACSTD2P09758 323 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 KLK2P20151 261 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 GABRA5P31644 462 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 EGR3Q06889 387 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 DOC2BQ14184 412 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 FCRLAQ7L513 359 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 GLB1L2Q8IW92 636 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 ZNF454Q8N9F8 522 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 COQ7Q99807 217 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 EXO5Q9H790 373 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 MCTS1Q9ULC4 181 aaKnown RBP18.82■□□□□ 0.6
VPS28-212ENST00000530836 STUB1Q9UNE7 303 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 TVP23AA6NH52 213 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 HSPB2A8KAH6 182 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 J3QLW9 94 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 IGHG3P01860 377 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 CPN1P15169 458 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 ZNF19P17023 458 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 CD79BP40259 229 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 ENTPD1P49961 510 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 GBX2P52951 348 aaPredicted RBP18.82■□□□□ 0.6
VPS28-212ENST00000530836 TLE1Q04724 770 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 HSPB2Q16082 182 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 TEX30Q5JUR7 227 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 LYPD4Q6UWN0 246 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 OTOSQ8NHW6 89 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 COPS3Q9UNS2 423 aa18.82■□□□□ 0.6
VPS28-212ENST00000530836 ZNF716A6NP11 495 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 ZNF593O00488 134 aaPredicted RBP18.81■□□□□ 0.6
VPS28-212ENST00000530836 GPR171O14626 319 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 TMCC2O75069 709 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 SULT1C4O75897 302 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 ZNF823P16415 610 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 ALOX5APP20292 161 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 HCCSP53701 268 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 OR12D2P58182 307 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 ADAM8P78325 824 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 CCDC58Q4VC31 144 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 CHMP1BQ7LBR1 199 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 SSX6Q7RTT6 188 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 SLC26A10Q8NG04 563 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 SMAP2Q8WU79 429 aaPredicted RBP18.81■□□□□ 0.6
VPS28-212ENST00000530836 OR2M2Q96R28 347 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 DEFB127Q9H1M4 99 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 SSR3Q9UNL2 185 aa18.81■□□□□ 0.6
VPS28-212ENST00000530836 ZNF462Q96JM2 2506 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 MED12Q93074 2177 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 AQP8O94778 261 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 CELP19835 753 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 GALP22466 123 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 NR4A1P22736 598 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 LAP3P28838 519 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 UGT2B10P36537 528 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 CSNK1A1P48729 337 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 ZNF133P52736 654 aaPredicted RBP18.8■□□□□ 0.6
VPS28-212ENST00000530836 TUBA1BP68363 451 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 FMODQ06828 376 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 RASGEF1BQ0VAM2 473 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 TRAM1Q15629 374 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 ETFDHQ16134 617 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 SLC18B1Q6NT16 456 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 SLC25A47Q6Q0C1 308 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 TUBA1AQ71U36 451 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 DPY19L4Q7Z388 723 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 FAM220AQ7Z4H9 259 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 SIAH3Q8IW03 269 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 TMEM123Q8N131 208 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 ZIC4Q8N9L1 334 aa18.8■□□□□ 0.6
VPS28-212ENST00000530836 KBTBD8Q8NFY9 601 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms