RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 VPS33AQ96AX1 596 aa9.76□□□□□ -0.85
SDCBP-211ENST00000523441 SLC47A1Q96FL8 570 aa9.76□□□□□ -0.85
SDCBP-211ENST00000523441 ZNF347Q96SE7 839 aa9.76□□□□□ -0.85
SDCBP-211ENST00000523441 SSBP3Q9BWW4 388 aaPredicted RBP9.76□□□□□ -0.85
SDCBP-211ENST00000523441 C1orf198Q9H425 327 aa9.76□□□□□ -0.85
SDCBP-211ENST00000523441 TCF7L2Q9NQB0 619 aa9.76□□□□□ -0.85
SDCBP-211ENST00000523441 CEACAM18A8MTB9 384 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 TPST1O60507 370 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 MFN2O95140 757 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 PLATP00750 562 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 VSIG8P0DPA2 414 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 SERPINB5P36952 375 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 GDI2P50395 445 aaKnown RBP9.75□□□□□ -0.85
SDCBP-211ENST00000523441 ZNF84P51523 738 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 MVDP53602 400 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 PPP1CBP62140 327 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 ERVK-25P63136 954 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 TXNL4AP83876 142 aaKnown RBP9.75□□□□□ -0.85
SDCBP-211ENST00000523441 LRRC74AQ0VAA2 488 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 TAF11Q15544 211 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 SGCAQ16586 387 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 C6orf10Q5SRN2 563 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 ULK3Q6PHR2 472 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 C5orf46Q6UWT4 87 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 C1orf174Q8IYL3 243 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 POU5F2Q8N7G0 328 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 OR5J2Q8NH18 312 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 MRAPQ8TCY5 172 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 DNAJA4Q8WW22 397 aaPredicted RBP9.75□□□□□ -0.85
SDCBP-211ENST00000523441 ITLN1Q8WWA0 313 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 MARS2Q96GW9 593 aaKnown RBP9.75□□□□□ -0.85
SDCBP-211ENST00000523441 SLC41A3Q96GZ6 507 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 PCGF1Q9BSM1 259 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 KCNN2Q9H2S1 579 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 TPT1P8Q9HAU6 139 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 TMEM27Q9HBJ8 222 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.75□□□□□ -0.85
SDCBP-211ENST00000523441 MRPL39Q9NYK5 338 aaKnown RBP9.75□□□□□ -0.85
SDCBP-211ENST00000523441 GPR45Q9Y5Y3 372 aa9.75□□□□□ -0.85
SDCBP-211ENST00000523441 KMT2CQ8NEZ4 4911 aaKnown RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 IGHV2-70DA0A0C4DH43 119 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 PIP5K1CO60331 668 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 ENTPD5O75356 428 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 CH25HO95992 272 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 CYB5R3P00387 301 aaPredicted RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 MELTFP08582 738 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 UMPSP11172 480 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 ZNF32P17041 273 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 CDH12P55289 794 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 RGS8P57771 180 aaPredicted RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 ABCE1P61221 599 aaKnown RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 FGF12P61328 243 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 OR1Q1Q15612 314 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 PDCD4Q53EL6 469 aaKnown RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 TTMPQ5BVD1 217 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 GPR157Q5UAW9 335 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 LRRN1Q6UXK5 716 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 NHLRC1Q6VVB1 395 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 C9orf139Q6ZV77 190 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 LRRC28Q86X40 367 aaPredicted RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 OR6X1Q8NH79 312 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 LINC01006Q8NI28 216 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 NFKBIDQ8NI38 313 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 ZNF420Q8TAQ5 688 aaPredicted RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 NSMAFQ92636 917 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 UPRTQ96BW1 309 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 ZBTB9Q96C00 473 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 RSPO3Q9BXY4 272 aaPredicted RBP9.74□□□□□ -0.85
SDCBP-211ENST00000523441 SLC19A3Q9BZV2 496 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 C20orf27Q9GZN8 174 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 C12orf10Q9HB07 376 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 CYSLTR2Q9NS75 346 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 PNPOQ9NVS9 261 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 ZDHHC8Q9ULC8 765 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 PPP1R3CQ9UQK1 317 aa9.74□□□□□ -0.85
SDCBP-211ENST00000523441 LOC100509620A0A075B734 347 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 A8MXK9 166 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 MCIDASD6RGH6 385 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 F5H0A9 414 aaPredicted RBP9.73□□□□□ -0.85
SDCBP-211ENST00000523441 H0YL77 283 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 FZD7O75084 574 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 ERLIN1O75477 346 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 NDUFA7O95182 113 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 SLC2A10O95528 541 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 CSF1P09603 554 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 PGA4P0DJD7 388 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 PGA3P0DJD8 388 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 TNFSF4P23510 183 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 AQP1P29972 269 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 MDH2P40926 338 aaKnown RBP9.73□□□□□ -0.85
SDCBP-211ENST00000523441 RPL14P50914 215 aaKnown RBP9.73□□□□□ -0.85
SDCBP-211ENST00000523441 PDCD1Q15116 288 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 C2orf68Q2NKX9 166 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 BEAN1Q3B7T3 259 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 TMEM155Q4W5P6 130 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 MTX3Q5HYI7 312 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 NXNQ6DKJ4 435 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 Q6YL49 198 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 ZNF620Q6ZNG0 422 aa9.73□□□□□ -0.85
SDCBP-211ENST00000523441 PDZD9Q8IXQ8 264 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms