RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 LEG1Q6P5S2 330 aa17.7■□□□□ 0.42
USP53-208ENST00000514305 CXorf67Q86X51 503 aaPredicted RBP17.7■□□□□ 0.42
USP53-208ENST00000514305 C17orf78Q8N4C9 275 aa17.7■□□□□ 0.42
USP53-208ENST00000514305 OR52E2Q8NGJ4 325 aa17.7■□□□□ 0.42
USP53-208ENST00000514305 OR8D4Q8NGM9 314 aa17.7■□□□□ 0.42
USP53-208ENST00000514305 MCHR2Q969V1 340 aa17.7■□□□□ 0.42
USP53-208ENST00000514305 ALKBH3Q96Q83 286 aaPredicted RBP17.7■□□□□ 0.42
USP53-208ENST00000514305 GABARAPL3Q9BY60 117 aa17.7■□□□□ 0.42
USP53-208ENST00000514305 PLEKHF2Q9H8W4 249 aa17.7■□□□□ 0.42
USP53-208ENST00000514305 MOV10Q9HCE1 1003 aaKnown RBP17.7■□□□□ 0.42
USP53-208ENST00000514305 VSX1Q9NZR4 365 aaPredicted RBP17.7■□□□□ 0.42
USP53-208ENST00000514305 ZNF469Q96JG9 3925 aaPredicted RBP17.69■□□□□ 0.42
USP53-208ENST00000514305 SLC22A23A1A5C7 686 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 ZNF99A8MXY4 864 aaPredicted RBP17.69■□□□□ 0.42
USP53-208ENST00000514305 FARS2O95363 451 aaKnown RBP17.69■□□□□ 0.42
USP53-208ENST00000514305 ATP6V1G2O95670 118 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 HIST1H1CP16403 213 aaKnown RBP17.69■□□□□ 0.42
USP53-208ENST00000514305 NPR2P20594 1047 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 COX5AP20674 150 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 CENPAP49450 140 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.69■□□□□ 0.42
USP53-208ENST00000514305 LRRC36Q1X8D7 754 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 CEACAM16Q2WEN9 425 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 NRN1LQ496H8 165 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 SLC35F1Q5T1Q4 408 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 OGFRL1Q5TC84 451 aaPredicted RBP17.69■□□□□ 0.42
USP53-208ENST00000514305 KLHL24Q6TFL4 600 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 BHLHA15Q7RTS1 189 aaPredicted RBP17.69■□□□□ 0.42
USP53-208ENST00000514305 ZNF555Q8NEP9 628 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 OR4K13Q8NH42 304 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 RASSF4Q9H2L5 321 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 KCNN2Q9H2S1 579 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 CMC2Q9NRP2 79 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 SMPD3Q9NY59 655 aaPredicted RBP17.69■□□□□ 0.42
USP53-208ENST00000514305 NF1P21359 2839 aa17.69■□□□□ 0.42
USP53-208ENST00000514305 MITFO75030 526 aaPredicted RBP17.68■□□□□ 0.42
USP53-208ENST00000514305 KHDRBS3O75525 346 aaKnown RBP17.68■□□□□ 0.42
USP53-208ENST00000514305 IGFBP1P08833 259 aaPredicted RBP17.68■□□□□ 0.42
USP53-208ENST00000514305 IGHV1-2P23083 117 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 UGT2B10P36537 528 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 ZNF133P52736 654 aaPredicted RBP17.68■□□□□ 0.42
USP53-208ENST00000514305 CDC42P60953 191 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 ADAM8P78325 824 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 RUNX1T1Q06455 604 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 FAM27E3Q08E93 113 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 SNAPC1Q16533 368 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 C10orf128Q5T292 105 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 LPCAT4Q643R3 524 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 ANKRD16Q6P6B7 361 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 STAC2Q6ZMT1 411 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 GALNT4Q8N4A0 578 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 ZNF433Q8N7K0 673 aaPredicted RBP17.68■□□□□ 0.42
USP53-208ENST00000514305 OR2T4Q8NH00 348 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 MUCL1Q96DR8 90 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 FOXB1Q99853 325 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 OBP2BQ9NPH6 170 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 FKBP7Q9Y680 259 aa17.68■□□□□ 0.42
USP53-208ENST00000514305 ZAR1LA6NP61 321 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 LYZL6O75951 148 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 WNT11O96014 354 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 PEX2P28328 305 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 CDKN2AP42771 156 aaKnown RBP17.67■□□□□ 0.42
USP53-208ENST00000514305 BLVRAP53004 296 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 UBE2NP61088 152 aaKnown RBP17.67■□□□□ 0.42
USP53-208ENST00000514305 LGALS3BPQ08380 585 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 ANKRD34AQ69YU3 496 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 LRFN4Q6PJG9 635 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 DPPA2Q7Z7J5 298 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 SDR9C7Q8NEX9 313 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 OR4Q3Q8NH05 313 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 NANOS1Q8WY41 292 aaKnown RBP17.67■□□□□ 0.42
USP53-208ENST00000514305 HSD17B8Q92506 261 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 BOD1Q96IK1 185 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 MUS81Q96NY9 551 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 NMNAT3Q96T66 252 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 SLC29A1Q99808 456 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 FN3KQ9H479 309 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 NGBQ9NPG2 151 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 ZNF226Q9NYT6 803 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 TVP23BQ9NYZ1 205 aa17.67■□□□□ 0.42
USP53-208ENST00000514305 H2AFY2Q9P0M6 372 aaPredicted RBP17.67■□□□□ 0.42
USP53-208ENST00000514305 NKX1-2Q9UD57 310 aaPredicted RBP17.67■□□□□ 0.42
USP53-208ENST00000514305 PRR23D1E9PI22 279 aaPredicted RBP17.66■□□□□ 0.42
USP53-208ENST00000514305 SLC16A7O60669 478 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 PRR23D2P0DMB1 279 aaPredicted RBP17.66■□□□□ 0.42
USP53-208ENST00000514305 FOSL1P15407 271 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 EDNRAP25101 427 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 TIMM23BQ5SRD1 257 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 SLX4IPQ5VYV7 408 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 TTC23Q5W5X9 447 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 ACSM5Q6NUN0 579 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 SLC25A47Q6Q0C1 308 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 DEPDC4Q8N2C3 294 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 IQCF1Q8N6M8 205 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 OR1K1Q8NGR3 316 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 TRUB1Q8WWH5 349 aaKnown RBP17.66■□□□□ 0.42
USP53-208ENST00000514305 WACQ9BTA9 647 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 MED18Q9BUE0 208 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 SYT4Q9H2B2 425 aa17.66■□□□□ 0.42
USP53-208ENST00000514305 IMPAD1Q9NX62 359 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms