RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 KLHL12Q53G59 568 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 FBXW10Q5XX13 1052 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 PLBD1Q6P4A8 553 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 TUBA1AQ71U36 451 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 CXXC5Q7LFL8 322 aaKnown RBP13.12□□□□□ -0.31
NUP54-213ENST00000513352 WFDC8Q8IUA0 241 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 CPOQ8IVL8 374 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 OR6V1Q8N148 313 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 LRRC18Q8N456 261 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 C17orf78Q8N4C9 275 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 TCEANCQ8N8B7 351 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 OR51L1Q8NGJ5 315 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 OR6K6Q8NGW6 343 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 BCL2L2Q92843 193 aaPredicted RBP13.12□□□□□ -0.31
NUP54-213ENST00000513352 RDH12Q96NR8 316 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 IL4I1Q96RQ9 567 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 SH3GL3Q99963 347 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 OR51V1Q9H2C8 321 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 SLC17A5Q9NRA2 495 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 B9D1Q9UPM9 204 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 POLR1DQ9Y2S0 133 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 UGT2A1Q9Y4X1 527 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 FKBP7Q9Y680 259 aa13.12□□□□□ -0.31
NUP54-213ENST00000513352 SPTAN1Q13813 2472 aaKnown RBP13.12□□□□□ -0.31
NUP54-213ENST00000513352 DCTN6O00399 190 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 CASKO14936 926 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 TLX2O43763 284 aaPredicted RBP13.11□□□□□ -0.31
NUP54-213ENST00000513352 PRKYO43930 277 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 GPANK1O95872 356 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 CLUP10909 449 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 PPP3CBP16298 524 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 SPI1P17947 270 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 LAP3P28838 519 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 GGT2P36268 569 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 PEX19P40855 299 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 PTDSS1P48651 473 aaKnown RBP13.11□□□□□ -0.31
NUP54-213ENST00000513352 RPS7P62081 194 aaKnown RBP13.11□□□□□ -0.31
NUP54-213ENST00000513352 PPA1Q15181 289 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 TIMM23BQ5SRD1 257 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 ZNF362Q5T0B9 420 aaPredicted RBP13.11□□□□□ -0.31
NUP54-213ENST00000513352 GLB1L2Q8IW92 636 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 SLC22A24Q8N4F4 322 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 DHRSXQ8N5I4 330 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 NANOS1Q8WY41 292 aaKnown RBP13.11□□□□□ -0.31
NUP54-213ENST00000513352 HSD17B8Q92506 261 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 MUS81Q96NY9 551 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 WFIKKN1Q96NZ8 548 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 USB1Q9BQ65 265 aaKnown RBP13.11□□□□□ -0.31
NUP54-213ENST00000513352 RACGAP1Q9H0H5 632 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 OR10A4Q9H209 315 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 KCNN2Q9H2S1 579 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 RNF121Q9H920 327 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 HINT3Q9NQE9 182 aaKnown RBP13.11□□□□□ -0.31
NUP54-213ENST00000513352 FAM118AQ9NWS6 357 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 AMDHD2Q9Y303 409 aa13.11□□□□□ -0.31
NUP54-213ENST00000513352 PRR14LQ5THK1 2151 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 IGLV1-36A0A0B4J1U3 117 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 LOC100130705A0A1B0GUX0 176 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 MPZL1O95297 269 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 WNT11O96014 354 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 COX6B1P14854 86 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 NPR2P20594 1047 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 MSR1P21757 451 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 SLC25A1P53007 311 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 MRPS34P82930 218 aaKnown RBP13.1□□□□□ -0.31
NUP54-213ENST00000513352 GLO1Q04760 184 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 TAB1Q15750 504 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 OTPQ5XKR4 325 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 SLC16A14Q7RTX9 510 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 P2RY8Q86VZ1 359 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 DMRTC2Q8IXT2 367 aaPredicted RBP13.1□□□□□ -0.31
NUP54-213ENST00000513352 BBS1Q8NFJ9 593 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 OR10H5Q8NGA6 315 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 TMEM163Q8TC26 289 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 HRASLS5Q96KN8 279 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 HCAR1Q9BXC0 346 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 C1QTNF6Q9BXI9 259 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 NELFAQ9H3P2 528 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 EMC7Q9NPA0 242 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 CCNB1IP1Q9NPC3 277 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 POLE4Q9NR33 117 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 CRIM1Q9NZV1 1036 aa13.1□□□□□ -0.31
NUP54-213ENST00000513352 H2AFY2Q9P0M6 372 aaPredicted RBP13.1□□□□□ -0.31
NUP54-213ENST00000513352 TVP23AA6NH52 213 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 DLGAP1O14490 977 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 HLA-HP01893 362 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 ZNF83P51522 516 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 AQP4P55087 323 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 PIGFQ07326 219 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 APOFQ13790 326 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 MEP1BQ16820 701 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 SP5Q6BEB4 398 aaPredicted RBP13.09□□□□□ -0.31
NUP54-213ENST00000513352 IZUMO2Q6UXV1 221 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 BCDIN3DQ7Z5W3 292 aaKnown RBP13.09□□□□□ -0.31
NUP54-213ENST00000513352 ZBTB46Q86UZ6 589 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 SKA3Q8IX90 412 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 DEPDC4Q8N2C3 294 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 WDR31Q8NA23 367 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 NABP1Q96AH0 204 aa13.09□□□□□ -0.31
NUP54-213ENST00000513352 DDOQ99489 341 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms