RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZNF493Q6ZR52 646 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 HDDC2Q7Z4H3 204 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 Q8N976 141 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 OR4C5Q8NGB2 326 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 ZNF596Q8TC21 504 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 LKAAEAR1Q8TD35 194 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 ZFP90Q8TF47 636 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 FAM3DQ96BQ1 224 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 C20orf24Q9BUV8 137 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 SLC17A9Q9BYT1 436 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 PLA2G2FQ9BZM2 168 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 OR51M1Q9H341 326 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 TPK1Q9H3S4 243 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 ANKRA2Q9H9E1 313 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 RAB20Q9NX57 234 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 ZNF629Q9UEG4 869 aaPredicted RBP2.58□□□□□ -2
HMGB1P28-201ENST00000507778 CARMIL3Q8ND23 1372 aa2.58□□□□□ -2
HMGB1P28-201ENST00000507778 CDC42BPBQ9Y5S2 1711 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 IGKV6D-21A0A0A0MT36 114 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 OR2AG2A6NM03 316 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 H0YHG0 523 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 SGK1O00141 431 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 SNAI2O43623 268 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 CLPXO76031 633 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 AIFM1O95831 613 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 GNAO1P09471 354 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 RRM2P31350 389 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 OTX1P32242 354 aaPredicted RBP2.57□□□□□ -2
HMGB1P28-201ENST00000507778 LONP1P36776 959 aaKnown RBP2.57□□□□□ -2
HMGB1P28-201ENST00000507778 AQP2P41181 271 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 C21orf59P57076 290 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 RGS8P57771 180 aaPredicted RBP2.57□□□□□ -2
HMGB1P28-201ENST00000507778 MADCAM1Q13477 382 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 CUL2Q13617 745 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 MRPL23Q16540 153 aaKnown RBP2.57□□□□□ -2
HMGB1P28-201ENST00000507778 ZSCAN26Q16670 478 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 PPM1LQ5SGD2 360 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 LY6G6FQ5SQ64 297 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 ANKRD22Q5VYY1 191 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 TEX43Q6ZNM6 134 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 CENPQQ7L2Z9 268 aaPredicted RBP2.57□□□□□ -2
HMGB1P28-201ENST00000507778 STPG2Q8N412 459 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 OR10G4Q8NGN3 311 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 OR4A4PQ8NGN8 299 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 OR4S2Q8NH73 311 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 FAM81AQ8TBF8 368 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 SERPINB12Q96P63 405 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 CHP1Q99653 195 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 MYOZ2Q9NPC6 264 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 KCNJ16Q9NPI9 418 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 MRPS18BQ9Y676 258 aaKnown RBP2.57□□□□□ -2
HMGB1P28-201ENST00000507778 NINLQ9Y2I6 1382 aa2.57□□□□□ -2
HMGB1P28-201ENST00000507778 TDRD6O60522 2096 aaKnown RBP2.57□□□□□ -2
HMGB1P28-201ENST00000507778 A0A075B6Q4 140 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 GLYATL1P3A0A0U1RQE8 302 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 A0A1W2PNU3 283 aaPredicted RBP2.56□□□□□ -2
HMGB1P28-201ENST00000507778 ANGPTL7O43827 346 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 DPM1O60762 260 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 SPAG7O75391 227 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 SRP72O76094 671 aaKnown RBP2.56□□□□□ -2
HMGB1P28-201ENST00000507778 H6PDO95479 791 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 SERPINA5P05154 406 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 FABP3P05413 133 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 TPM2P07951 284 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 EIF2S2P20042 333 aaKnown RBP2.56□□□□□ -2
HMGB1P28-201ENST00000507778 SLC1A1P43005 524 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 PPOXP50336 477 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 RAB10P61026 200 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 CCNA1P78396 465 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 LRRC63Q05C16 580 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 POU2AF1Q16633 256 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 HES5Q5TA89 166 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 KRTAP5-4Q6L8H1 288 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 REEP3Q6NUK4 255 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 SLC16A14Q7RTX9 510 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 MMAAQ8IVH4 418 aaKnown RBP2.56□□□□□ -2
HMGB1P28-201ENST00000507778 C12orf56Q8IXR9 622 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 OR5B3Q8NH48 314 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 MCUR1Q96AQ8 359 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 BMFQ96LC9 184 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 WFIKKN1Q96NZ8 548 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 TGS1Q96RS0 853 aaKnown RBP2.56□□□□□ -2
HMGB1P28-201ENST00000507778 VCXQ9H320 206 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 TMEM185BQ9H7F4 350 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 VPS37BQ9H9H4 285 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 ZNF160Q9HCG1 818 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 LHX9Q9NQ69 397 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 TBX21Q9UL17 535 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 MAPK8IP3Q9UPT6 1336 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 NSD2O96028 1365 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 AKNAQ7Z591 1439 aa2.56□□□□□ -2
HMGB1P28-201ENST00000507778 ANKRD63C9JTQ0 380 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SPECC1L-ADORA2AF8WAN1 911 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 SIRPB1O00241 398 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 NDUFAB1O14561 156 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 KLHL41O60662 606 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 CDH16O75309 829 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 RETP07949 1114 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 PRPS2P11908 318 aa2.55□□□□□ -2
HMGB1P28-201ENST00000507778 KRTAP5-9P26371 169 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms