RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 IGHV3-13P01766 116 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SERPINA5P05154 406 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 CHRNGP07510 517 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 GSTA1P08263 222 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 KRT16P08779 473 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 FKBP2P26885 142 aaKnown RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 GRPRP30550 384 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 WNT5AP41221 380 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 HTR3AP46098 478 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 UCP2P55851 309 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 LINC00310P59036 64 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 FGF12P61328 243 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 RBBP4Q09028 425 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SMU1Q2TAY7 513 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 PGS1Q32NB8 556 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 PCGF3Q3KNV8 242 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 LSM12Q3MHD2 195 aaKnown RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 FAM153CQ494X1 144 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 GPAT3Q53EU6 434 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 RUNDC3AQ59EK9 446 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 THEM4Q5T1C6 240 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 XP32Q5T750 250 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 OGFOD2Q6N063 350 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 C6orf89Q6UWU4 347 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 LYPD2Q6UXB3 125 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF836Q6ZNA1 936 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF620Q6ZNG0 422 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF627Q7L945 461 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 R3HCC1LQ7Z5L2 792 aaKnown RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 LRRC28Q86X40 367 aaPredicted RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SLC22A9Q8IVM8 553 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 DDIASQ8IXT1 998 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 C1orf174Q8IYL3 243 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF101Q8IZC7 436 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 MUC20Q8N307 709 aaPredicted RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 MIER2Q8N344 545 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 ZSCAN4Q8NAM6 433 aaPredicted RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SLC30A7Q8NEW0 376 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SPATA4Q8NEY3 305 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 NUDT10Q8NFP7 164 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 OR1J1Q8NGS3 322 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF519Q8TB69 540 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 PNPT1Q8TCS8 783 aaKnown RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 MIPOL1Q8TD10 442 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SNX33Q8WV41 574 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 IPCEF1Q8WWN9 437 aaPredicted RBP4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SGCDQ92629 289 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 TAAR8Q969N4 342 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 PHF21AQ96BD5 680 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 ELMOD3Q96FG2 381 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 NUDT11Q96G61 164 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 AJUBAQ96IF1 538 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 WWC2-AS2Q96NR7 200 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 OXGR1Q96P68 337 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 DUSP26Q9BV47 211 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 TAPBPLQ9BX59 468 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 FUT8Q9BYC5 575 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SEMA6AQ9H2E6 1030 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SLC7A8Q9UHI5 535 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 KLHL21Q9UJP4 597 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 POFUT2Q9Y2G5 429 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 SAR1BQ9Y6B6 198 aa4.38□□□□□ -1.71
PTPN4-209ENST00000469511 IGKV1D-42A0A075B6H8 117 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 IGHV2-70DA0A0C4DH43 119 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 IGHV3-64DA0A0J9YX35 117 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 CENPVL3A0A0U1RRI6 287 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 C9orf118A6NHY6 69 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 DUXAA6NLW8 204 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 FAAHO00519 579 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 TNFRSF13BO14836 293 aaPredicted RBP4.37□□□□□ -1.71
PTPN4-209ENST00000469511 GLRA3O75311 464 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 ERLIN1O75477 346 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 SERPINI2O75830 405 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 RAB36O95755 333 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 AK1P00568 194 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 SNRPAP09012 282 aaKnown RBP4.37□□□□□ -1.71
PTPN4-209ENST00000469511 G6PDP11413 515 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 PTMSP20962 102 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 RPS4Y1P22090 263 aaKnown RBP4.37□□□□□ -1.71
PTPN4-209ENST00000469511 ARRB2P32121 409 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 HPCAL1P37235 193 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 PAFAH1B1P43034 410 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 SERPINB9P50453 376 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 RPS23P62266 143 aaKnown RBP4.37□□□□□ -1.71
PTPN4-209ENST00000469511 PRB3Q04118 309 aaPredicted RBP4.37□□□□□ -1.71
PTPN4-209ENST00000469511 C1DQ13901 141 aaKnown RBP4.37□□□□□ -1.71
PTPN4-209ENST00000469511 C2orf68Q2NKX9 166 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 C6orf136Q5SQH8 315 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 IL23RQ5VWK5 629 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 WBP2NLQ6ICG8 309 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 ZYG11AQ6WRX3 759 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 TIFABQ6ZNK6 161 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 Q6ZR03 302 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 SERPINA11Q86U17 422 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 COMTD1Q86VU5 262 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 PDZD9Q8IXQ8 264 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 CCDC36Q8IYA8 594 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 KLHL36Q8N4N3 616 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 FITM2Q8N6M3 262 aa4.37□□□□□ -1.71
PTPN4-209ENST00000469511 CPEB3Q8NE35 698 aaKnown RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms