RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 N4BP2Q86UW6 1770 aaPredicted RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 CHD4Q14839 1912 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 BLACEA4D250 179 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 ABLIM3O94929 683 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 PPP1R3DO95685 299 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 SLC35G1Q2M3R5 365 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 LEG1Q6P5S2 330 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 SLAMF8Q9P0V8 285 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 C2orf78A6NCI8 922 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 EPXP11678 715 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 VIPR2P41587 438 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 SMAD4Q13485 552 aaKnown RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 MPEG1Q2M385 716 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 PODNL1Q6PEZ8 512 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 OR5M9Q8NGP3 310 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 OR13C5Q8NGS8 318 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 HMX2A2RU54 273 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 B4E171 279 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 H3BQ06 376 aaPredicted RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 MBTPS2O43462 519 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 GCGP01275 180 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 FCGR2CP31995 323 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 OR3A1P47881 315 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 TSPAN31Q12999 210 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 TESK1Q15569 626 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 TMPRSS11FQ6ZWK6 438 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 FUNDC1Q8IVP5 155 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 TBC1D20Q96BZ9 403 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 MS4A3Q96HJ5 214 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 TAAR9Q96RI9 348 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 CSF3RQ99062 836 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 STEAP1Q9UHE8 339 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 FLVCR2Q9UPI3 526 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 LOC390937A0A1W2PQ73 354 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 ANKRD61A6NGH8 418 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 PRDX3P30048 256 aaKnown RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 HTR1FP30939 366 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 MLF2Q15773 248 aaPredicted RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 OGFOD3Q6PK18 319 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 TSSK2Q96PF2 358 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 OR10A5Q9H207 317 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 MYOTQ9UBF9 498 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 AQP7P3A6NL99 342 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 H3BNC9 293 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 SFTPCP11686 197 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 BCKDHBP21953 392 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 SIRPAP78324 504 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 RBPJQ06330 500 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 SLC10A2Q12908 348 aaPredicted RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 UBE3DQ7Z6J8 389 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 THNSL2Q86YJ6 484 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 OR8J2Q8NGG1 315 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 OR51Q1Q8NH59 317 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 FGF13Q92913 245 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 ZNF845Q96IR2 970 aaPredicted RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 PARP12Q9H0J9 701 aaKnown RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 USP22Q9UPT9 525 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 TRAPPC1Q9Y5R8 145 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 A0A0D9SEW6 157 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 GABRR3A8MPY1 467 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 XRCC3O43542 346 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 OR4E1P0C645 316 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 CEBPBP17676 345 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 RPL12P30050 165 aaKnown RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 PSMB10P40306 273 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 ID2Q02363 134 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 HNRNPA1L2Q32P51 320 aaKnown RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 RNF111Q6ZNA4 994 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 USP53Q70EK8 1073 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 IFI44Q8TCB0 444 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 ZNF689Q96CS4 500 aaPredicted RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 SMIM7Q9BQ49 75 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 KCNIP1Q9NZI2 227 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 ACRV1P26436 265 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 SLC19A1P41440 591 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 PRPS1P60891 318 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 PLCXD2Q0VAA5 305 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 ZNF154Q13106 437 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 AWAT1Q58HT5 328 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 DCXRQ7Z4W1 244 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 CBARPQ8N350 705 aaPredicted RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 PPP1R1CQ8WVI7 109 aa12.25□□□□□ -0.45
USP40-208ENST00000450966 NAA11Q9BSU3 229 aaPredicted RBP12.25□□□□□ -0.45
USP40-208ENST00000450966 A8MVM7 634 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SOX18P35713 384 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 CLDN10P78369 228 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 ST3GAL2Q16842 350 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 Q499Y3 187 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 SMIM4Q8WVI0 70 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 MSLNLQ96KJ4 702 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 BMFQ96LC9 184 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 CPEB1Q9BZB8 566 aaKnown RBP12.24□□□□□ -0.45
USP40-208ENST00000450966 PPP1R3CQ9UQK1 317 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 TRAV34A0A0B4J273 112 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OPN1MWP04001 364 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OPN1MW2P0DN77 364 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 OPN1MW3P0DN78 364 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 PTNP21246 168 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 YPEL5P62699 121 aa12.24□□□□□ -0.45
USP40-208ENST00000450966 Q5PR19 223 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms