RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 HYAL4Q2M3T9 481 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 SCGB2B2Q4G0G5 96 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 TMEM200AQ86VY9 491 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZNF614Q8N883 585 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 FOXRED1Q96CU9 486 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 CPNE2Q96FN4 548 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 NKX3-1Q99801 234 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 RAB11FIP5Q9BXF6 653 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 SLCO5A1Q9H2Y9 848 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 RHOFQ9HBH0 211 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 MKKSQ9NPJ1 570 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 SMCO4Q9NRQ5 59 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 HCFC1R1Q9NWW0 138 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 SLC2A8Q9NY64 477 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 GHRLQ9UBU3 117 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 LPAR3Q9UBY5 353 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZNF107Q9UII5 783 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 A0A087WV62 115 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 TRBV23-1A0A0A0MS06 115 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 A0A1W2PPE3 182 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 CYB5AP00167 134 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 CRHP06850 196 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 CISD3P0C7P0 127 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 FOSL1P15407 271 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 ZNF28P17035 718 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 GABRA3P34903 492 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 PPT1P50897 306 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 CAV2P51636 162 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 SLC25A1P53007 311 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 RUNX2Q13950 521 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 RBM39Q14498 530 aaKnown RBP9.68□□□□□ -0.86
USP54-204ENST00000422491 ELOCQ15369 112 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 ULK3Q6PHR2 472 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 HIST1H2BAQ96A08 127 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 RRNAD1Q96FB5 475 aaKnown RBP9.68□□□□□ -0.86
USP54-204ENST00000422491 SLC41A2Q96JW4 573 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 GPX7Q96SL4 187 aaPredicted RBP9.68□□□□□ -0.86
USP54-204ENST00000422491 TCEAL7Q9BRU2 100 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 SEC61A2Q9H9S3 476 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 METTL1Q9UBP6 276 aaKnown RBP9.68□□□□□ -0.86
USP54-204ENST00000422491 KLK13Q9UKR3 277 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 FARSAQ9Y285 508 aaKnown RBP9.68□□□□□ -0.86
USP54-204ENST00000422491 CSAG2Q9Y5P2 127 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 C8AP07357 584 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 APEHP13798 732 aaKnown RBP9.68□□□□□ -0.86
USP54-204ENST00000422491 AGAP20933 346 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 PSMB6P28072 239 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 PBX2P40425 430 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 KIR3DL2P43630 455 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 F2RL1P55085 397 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 HGFACQ04756 655 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 EXOSC7Q15024 291 aaKnown RBP9.68□□□□□ -0.86
USP54-204ENST00000422491 RNF212Q495C1 297 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 RHOUQ7L0Q8 258 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 NUDCD2Q8WVJ2 157 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 FBXO17Q96EF6 278 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 ZNF558Q96NG5 402 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 PHB2Q99623 299 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 POLE3Q9NRF9 147 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 IKZF2Q9UKS7 526 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 PCDHGA1Q9Y5H4 931 aa9.68□□□□□ -0.86
USP54-204ENST00000422491 SCN2AQ99250 2005 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 A0A0B4J2A0 478 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 OR52A4PA6NMU1 304 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 TTLL8A6PVC2 850 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 DCTN6O00399 190 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 HTR3BO95264 441 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 S100A6P06703 90 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 SFTA3P0C7M3 94 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 RCC1P18754 421 aaPredicted RBP9.67□□□□□ -0.86
USP54-204ENST00000422491 AQP2P41181 271 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 MESP2Q0VG99 397 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 FABP9Q0Z7S8 132 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 ELAVL1Q15717 326 aaKnown RBP9.67□□□□□ -0.86
USP54-204ENST00000422491 ZNF77Q15935 545 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 ETV3LQ6ZN32 361 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 ZNF627Q7L945 461 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 SLC29A4Q7RTT9 530 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 SHISA5Q8N114 240 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 FAM174AQ8TBP5 190 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 DCUN1D4Q92564 292 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 C14orf79Q96F83 325 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 C4orf45Q96LM5 186 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 LMF1Q96S06 567 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 CLCC1Q96S66 551 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 NAA11Q9BSU3 229 aaPredicted RBP9.67□□□□□ -0.86
USP54-204ENST00000422491 RNF126Q9BV68 326 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 TEX101Q9BY14 249 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 CHMP1AQ9HD42 196 aaPredicted RBP9.67□□□□□ -0.86
USP54-204ENST00000422491 SHPKQ9UHJ6 478 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 DAPP1Q9UN19 280 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 TMED7Q9Y3B3 224 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 A0A1W2PPC1 479 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 EEF1E1-BLOC1S5C9J1V9 151 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 LILRB3O75022 631 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 PRF1P14222 555 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 CEBPBP17676 345 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 IL13RA1P78552 427 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 RASGEF1BQ0VAM2 473 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 FAM53BQ14153 422 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms