RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PAPD4Q6PIY7 484 aaKnown RBP12.06□□□□□ -0.48
VPS54-203ENST00000409558 ADGRG3Q86Y34 549 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 OR51S1Q8NGJ8 323 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ADIPOR1Q96A54 375 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ZNF578Q96N58 590 aaPredicted RBP12.06□□□□□ -0.48
VPS54-203ENST00000409558 ABHD6Q9BV23 337 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 PHF7Q9BWX1 381 aaPredicted RBP12.06□□□□□ -0.48
VPS54-203ENST00000409558 NUBP2Q9Y5Y2 271 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ATG2AQ2TAZ0 1938 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 IGHV3-15A0A0B4J1V0 119 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ARPC5O15511 151 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 EXOSC6Q5RKV6 272 aaKnown RBP12.06□□□□□ -0.48
VPS54-203ENST00000409558 OR4S1Q8NGB4 309 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 CCDC120Q96HB5 630 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 CHST6Q9GZX3 395 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 KLHL13Q9P2N7 655 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 PCDHGA5Q9Y5G8 931 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 I3L521 148 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 RBBP9O75884 186 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 PSMB1P20618 241 aaKnown RBP12.06□□□□□ -0.48
VPS54-203ENST00000409558 KIR3DL2P43630 455 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 GABRA4P48169 554 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ZNF227Q86WZ6 799 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 OR13C3Q8NGS6 347 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 SMIM4Q8WVI0 70 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ELMOD3Q96FG2 381 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 MAP6Q96JE9 813 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 EML5Q05BV3 1969 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 PYCARD-AS1I3L0S3 204 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 CD3DP04234 171 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.05□□□□□ -0.48
VPS54-203ENST00000409558 C2orf76Q3KRA6 126 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 DND1Q8IYX4 353 aaKnown RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 HYLS1Q96M11 299 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 OR5B2Q96R09 309 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 GTPBP2Q9BX10 602 aaKnown RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 DNAJC13O75165 2243 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 A0A1B0GX78 115 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 PRSS37A4D1T9 235 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 TRIM3O75382 744 aaPredicted RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 OR2J2O76002 312 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 DPP4P27487 766 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 MMP15P51511 669 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 BIDP55957 195 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 RNF4P78317 190 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 FAM69AQ5T7M9 428 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 RTN4RL2Q86UN3 420 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 OR11G2Q8NGC1 345 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 CLEC4MQ9H2X3 399 aaPredicted RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 GHITMQ9H3K2 345 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 FOXJ3Q9UPW0 622 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 TRAV36DV7A0A075B6V5 113 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 TRAV1-2A0A0B4J238 106 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 TMEM269A0A1B0GVZ9 245 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 OR4C45A6NMZ5 311 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 PATE3B3GLJ2 98 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 SCRG1O75711 98 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 NXPH1P58417 271 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 FOXF1Q12946 379 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 PTCRAQ6ISU1 281 aaPredicted RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 EID2Q8N6I1 236 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 CRB3Q9BUF7 120 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 EXO5Q9H790 373 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 TMEM235A6NFC5 223 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 CFDP00746 253 aaPredicted RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 PLATP00750 562 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 CLDN6P56747 220 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 LCN10Q6JVE6 187 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 OVCH1Q7RTY7 1134 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 NUP54Q7Z3B4 507 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 ZNF440Q8IYI8 595 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 TCTE3Q8IZS6 198 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 OR10G3Q8NGC4 313 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 MNTQ99583 582 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 SOX7Q9BT81 388 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 SLA2Q9H6Q3 261 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 ELL3Q9HB65 397 aaPredicted RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 MRPL22Q9NWU5 206 aaKnown RBP12.05□□□□□ -0.48
VPS54-203ENST00000409558 FBXO4Q9UKT5 387 aa12.05□□□□□ -0.48
VPS54-203ENST00000409558 FRG2CA6NGY1 282 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 PEX14O75381 377 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 RIDAP52758 137 aaKnown RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 RPL27P61353 136 aaKnown RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 RPS4XP62701 263 aaKnown RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 TAF13Q15543 124 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 SLC18B1Q6NT16 456 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 C9orf62Q8N4C0 152 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 ADAMTS14Q8WXS8 1223 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 FAM71F1Q96KD3 344 aaPredicted RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 NMNAT2Q9BZQ4 307 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 LRP12Q9Y561 859 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 CCSO14618 274 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 GLULP15104 373 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 GNG2P59768 71 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 KLF9Q13886 244 aaPredicted RBP12.04□□□□□ -0.48
VPS54-203ENST00000409558 OR10H5Q8NGA6 315 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 OR1N1Q8NGS0 311 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 CASTOR1Q8WTX7 329 aa12.04□□□□□ -0.48
VPS54-203ENST00000409558 FAM3DQ96BQ1 224 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms