RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 UNC13CQ8NB66 2214 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 SLC22A23A1A5C7 686 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ARGFXA6NJG6 315 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 C4orf51C9J302 202 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ACOT7O00154 380 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 TERTO14746 1132 aaKnown RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 MED6O75586 246 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 EMDP50402 254 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 FAM83CQ9BQN1 747 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 SFXN1Q9H9B4 322 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 FN3KRPQ9HA64 309 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 DAPP1Q9UN19 280 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ZNF281Q9Y2X9 895 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 SVILO95425 2214 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 OR5K3A6NET4 321 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ANKRD34CP0C6C1 535 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ZNF28P17035 718 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 PXNP49023 591 aaPredicted RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 Q5PR19 223 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 FBXO42Q6P3S6 717 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 USP53Q70EK8 1073 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 FAM3CQ92520 227 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ISOC2Q96AB3 205 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 TMEM41AQ96HV5 264 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 CGGBP1Q9UFW8 167 aaPredicted RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 GPR160Q9UJ42 338 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 POMT2Q9UKY4 750 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 SF3B6Q9Y3B4 125 aaKnown RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 DSPPQ9NZW4 1301 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 MAOAP21397 527 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 C5AR1P21730 350 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 CD34P28906 385 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 GUCA1AP43080 201 aaPredicted RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 RPL29P47914 159 aaKnown RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 LSSP48449 732 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 CAMLGP49069 296 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 SHISA5Q8N114 240 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 MFSD9Q8NBP5 474 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 OR14A16Q8NHC5 309 aa10.91□□□□□ -0.66
HMGB1-206ENST00000405805 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.91□□□□□ -0.66
HMGB1-206ENST00000405805 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 TNFSF12O43508 249 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 LGALSLQ3ZCW2 172 aaPredicted RBP10.9□□□□□ -0.66
HMGB1-206ENST00000405805 HIST2H3PS2Q5TEC6 136 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 WDR88Q6ZMY6 472 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 P4HA3Q7Z4N8 544 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 RLN3Q8WXF3 142 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 TGM7Q96PF1 710 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 RPP25Q9BUL9 199 aaKnown RBP10.9□□□□□ -0.66
HMGB1-206ENST00000405805 PIGMQ9H3S5 423 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 PCOLCE2Q9UKZ9 415 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 C2orf72A6NCS6 295 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 TMEM235A6NFC5 223 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 GGT3PA6NGU5 568 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 P2RX6O15547 441 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 SLC16A7O60669 478 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 CTSVO60911 334 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 EML2O95834 649 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 MSR1P21757 451 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 SDHAP31040 664 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 GPR143P51810 404 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 CBFBQ13951 182 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 EIF2B1Q14232 305 aaKnown RBP10.9□□□□□ -0.66
HMGB1-206ENST00000405805 MANEAQ5SRI9 462 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 RPL22L1Q6P5R6 122 aaKnown RBP10.9□□□□□ -0.66
HMGB1-206ENST00000405805 TSSK4Q6SA08 328 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 TMED6Q8WW62 240 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 NKX2-4Q9H2Z4 354 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 DHDHQ9UQ10 334 aa10.9□□□□□ -0.66
HMGB1-206ENST00000405805 IGKV1-8A0A0C4DH67 115 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 A0A1W2PPV9 198 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 ADAM10O14672 748 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 EPPINO95925 133 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 OR2T7P0C7T2 308 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 FABP4P15090 132 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 GLP1RP43220 463 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 ARRB1P49407 418 aaPredicted RBP10.9□□□□□ -0.67
HMGB1-206ENST00000405805 BAMBIQ13145 260 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 C9orf50Q5SZB4 431 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 ADAMTSL4Q6UY14 1074 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 MAMSTRQ6ZN01 415 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 ZNF765Q7L2R6 523 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 NR2C2APQ86WQ0 139 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 STPG2Q8N412 459 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 OR2T27Q8NH04 317 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 ELP5Q8TE02 316 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 WDR34Q96EX3 536 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 MS4A3Q96HJ5 214 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 OR1F2PQ96R84 312 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 ELOVL3Q9HB03 270 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 SIGLEC7Q9Y286 467 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 NPFFR2Q9Y5X5 522 aa10.9□□□□□ -0.67
HMGB1-206ENST00000405805 OR6C68A6NDL8 312 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 CEACAM5P06731 702 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 POU3F2P20265 443 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 GNG10P50151 68 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 RPS27AP62979 156 aaKnown RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 UBA52P62987 128 aaKnown RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 BTG2P78543 158 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 CDK5R1Q15078 307 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms