RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 TMEM200CA6NKL6 621 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 DCTN6O00399 190 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 BET1O15155 118 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 SEC14L5O43304 696 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 ANKRD34CP0C6C1 535 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 DIO1P49895 249 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 LPCAT3Q6P1A2 487 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 SPICQ8N5J4 248 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 SLC19A3Q9BZV2 496 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 EMC9Q9Y3B6 208 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 WDR81Q562E7 1941 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 NME2P1O60361 137 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 IFNA10P01566 189 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 IFNA4P05014 189 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 ZNF16P17020 682 aaPredicted RBP13.03□□□□□ -0.32
RTF1-201ENST00000389629 OMGP23515 440 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 LIMS1P48059 325 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 KCNJ3P48549 501 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 CLRN1P58418 232 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 DPTQ07507 201 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 MELKQ14680 651 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 PRSS53Q2L4Q9 553 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 ZNF626Q68DY1 528 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 RASGRP3Q8IV61 690 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 SYS1Q8N2H4 156 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 PGAM5Q96HS1 289 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 ADOQ96SZ5 270 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 TINAGL1Q9GZM7 467 aaPredicted RBP13.03□□□□□ -0.32
RTF1-201ENST00000389629 WDR76Q9H967 626 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 UFSP2Q9NUQ7 469 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 F5P12259 2224 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 ZNF236Q9UL36 1845 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 PRSS38A1L453 326 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 SDHAP31040 664 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 AFF3P51826 1226 aaKnown RBP13.03□□□□□ -0.32
RTF1-201ENST00000389629 IAH1Q2TAA2 248 aaPredicted RBP13.03□□□□□ -0.32
RTF1-201ENST00000389629 TMEM52BQ4KMG9 183 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 EXOSC6Q5RKV6 272 aaKnown RBP13.03□□□□□ -0.32
RTF1-201ENST00000389629 SULF2Q8IWU5 870 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 SLX1AQ9BQ83 275 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 UBE2J1Q9Y385 318 aaPredicted RBP13.03□□□□□ -0.32
RTF1-201ENST00000389629 FBXO7Q9Y3I1 522 aa13.03□□□□□ -0.32
RTF1-201ENST00000389629 SIRT4Q9Y6E7 314 aaPredicted RBP13.03□□□□□ -0.32
RTF1-201ENST00000389629 LCTP09848 1927 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 AQP8O94778 261 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 KLF8O95600 359 aaPredicted RBP13.02□□□□□ -0.32
RTF1-201ENST00000389629 TMEM215Q68D42 235 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 ZNF425Q6IV72 752 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 THSD4Q6ZMP0 1018 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 MRPL43Q8N983 215 aaKnown RBP13.02□□□□□ -0.32
RTF1-201ENST00000389629 SCGB1C1Q8TD33 95 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 VN1R3Q9BXE9 311 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 VSX1Q9NZR4 365 aaPredicted RBP13.02□□□□□ -0.32
RTF1-201ENST00000389629 SNU13P55769 128 aaKnown RBP13.02□□□□□ -0.32
RTF1-201ENST00000389629 PLCXD2Q0VAA5 305 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 TMEM225Q6GV28 225 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 ZNF547Q8IVP9 402 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 ZBP1Q9H171 429 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 C6orf106Q9H6K1 298 aaPredicted RBP13.02□□□□□ -0.32
RTF1-201ENST00000389629 SDHAF3Q9NRP4 125 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 KLRF1Q9NZS2 232 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 ASH2LQ9UBL3 628 aa13.02□□□□□ -0.32
RTF1-201ENST00000389629 IMPA2O14732 288 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 HOXB3P14651 431 aaPredicted RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 MECP2P51608 486 aaKnown RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 MLC1Q15049 377 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 OR4S1Q8NGB4 309 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 OR5D18Q8NGL1 313 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 WDR77Q9BQA1 342 aaPredicted RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 C19orf53Q9UNZ5 99 aaPredicted RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 ZNF638Q14966 1978 aaKnown RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 DOCK3Q8IZD9 2030 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 BRWD1Q9NSI6 2320 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 CDC14CA4D256 554 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 TMEM225BP0DP42 221 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 GALP22466 123 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 BLKP51451 505 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 ELOCQ15369 112 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 TMEM244Q5VVB8 128 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 ABHD12BQ7Z5M8 362 aaPredicted RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 OR5M9Q8NGP3 310 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 NUDCD2Q8WVJ2 157 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 PTP4A1Q93096 173 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 LINC00615Q96LM1 132 aaPredicted RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 OR5B12Q96R08 314 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 DUSP22Q9NRW4 184 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 DAPP1Q9UN19 280 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 FOXJ3Q9UPW0 622 aa13.02□□□□□ -0.33
RTF1-201ENST00000389629 PCYT1BQ9Y5K3 369 aaPredicted RBP13.02□□□□□ -0.33
RTF1-201ENST00000389629 POM121BA6NF01 834 aa13.01□□□□□ -0.33
RTF1-201ENST00000389629 PPP1R2P9O14990 202 aa13.01□□□□□ -0.33
RTF1-201ENST00000389629 TBX19O60806 448 aa13.01□□□□□ -0.33
RTF1-201ENST00000389629 NSA2O95478 260 aaKnown RBP13.01□□□□□ -0.33
RTF1-201ENST00000389629 CD14P08571 375 aa13.01□□□□□ -0.33
RTF1-201ENST00000389629 PGCP20142 388 aa13.01□□□□□ -0.33
RTF1-201ENST00000389629 EIF2S3P41091 472 aaKnown RBP13.01□□□□□ -0.33
RTF1-201ENST00000389629 TSFMP43897 325 aaKnown RBP13.01□□□□□ -0.33
RTF1-201ENST00000389629 SLC25A30Q5SVS4 291 aa13.01□□□□□ -0.33
RTF1-201ENST00000389629 C11orf87Q6NUJ2 197 aa13.01□□□□□ -0.33
RTF1-201ENST00000389629 PNPLA2Q96AD5 504 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms