RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 OR2G3Q8NGZ4 309 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 CD3DP04234 171 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 RAB38P57729 211 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 Q6ZRG5 221 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 WFDC5Q8TCV5 224 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 TMEM30AQ9NV96 361 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 ARRDC5A6NEK1 342 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 ARGFXA6NJG6 315 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 GALR3O60755 368 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 RPP30P78346 268 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 DSC1Q08554 894 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 AADACL3Q5VUY0 350 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 BAGE3Q86Y29 109 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 BAGE2Q86Y30 109 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 SMIM4Q8WVI0 70 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 PSMF1Q92530 271 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC6A13Q9NSD5 602 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 PRELID3BQ9Y3B1 194 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 NUP214P35658 2090 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF724A8MTY0 619 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 JTBO76095 146 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 BCL6P41182 706 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 EEF1A1P68104 462 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 CD300LGQ6UXG3 332 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 WDR5BQ86VZ2 330 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF595Q8IYB9 648 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 PRSS35Q8N3Z0 413 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 EPHX3Q9H6B9 360 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 ISG20L2Q9H9L3 353 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC25A19Q9HC21 320 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 TRAV36DV7A0A075B6V5 113 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 FCMRO60667 390 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 HIST1H1CP16403 213 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 PGFP49763 221 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 VEGFBP49765 207 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 C1orf87Q8N0U7 546 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 LGI3Q8N145 548 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 CLEC1AQ8NC01 280 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 OR51A4Q8NGJ6 313 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 OR52B4Q8NGK2 314 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 HSD17B8Q92506 261 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 SMIM19Q96E16 107 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 CDH20Q9HBT6 801 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 CUTCQ9NTM9 273 aa17.93■□□□□ 0.46
CCDC88B-202ENST00000356786 LOC102725191A0A1B0GVB3 256 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 OR4E1P0C645 316 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 GLI4P10075 376 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 RPL34P49207 117 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 BORCS7Q96B45 105 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 ANKRD30BLA7E2S9 258 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 TRAPPC2LH3BP13 241 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 H2AFB1P0C5Y9 115 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 KITLGP21583 273 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 OPN5Q6U736 354 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 ABHD5Q8WTS1 349 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 BTF3L4Q96K17 158 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC22A11Q9NSA0 550 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 EPHA4P54764 986 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 SNRPNP63162 240 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 CDK5R1Q15078 307 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC25A35Q3KQZ1 300 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 C1QTNF12Q5T7M4 302 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 MED25Q71SY5 747 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 OR1J2Q8NGS2 313 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 CYSLTR2Q9NS75 346 aa17.92■□□□□ 0.46
CCDC88B-202ENST00000356786 ST8SIA3O43173 380 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TMPRSS11DO60235 418 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ALOX5APP20292 161 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ZP2Q05996 745 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 CALHM3Q86XJ0 350 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 SYS1Q8N2H4 156 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 DERL3Q96Q80 235 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 SDF2Q99470 211 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 SGPP1Q9BX95 441 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 B3GALT5Q9Y2C3 310 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TSPAN12O95859 305 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TRHRP34981 398 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 DCAF7P61962 342 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 MFAP5Q13361 173 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 CAMK2BQ13554 666 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 OR5M8Q8NGP6 311 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TPSD1Q9BZJ3 242 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 BANF2Q9H503 90 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 PLAC1Q9HBJ0 212 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 SPHK1Q9NYA1 384 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 PRR35P0CG20 571 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 CEBPBP17676 345 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 IL2RGP31785 369 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TRMT12Q53H54 448 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TMEM81Q6P7N7 255 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC39A5Q6ZMH5 540 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 LRRC18Q8N456 261 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 OR13C8Q8NGS7 320 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ORAI1Q96D31 301 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 OR51B6Q9H340 312 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 HAO2Q9NYQ3 351 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 PPP5D1E7EU14 171 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ETHE1O95571 254 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 EPXP11678 715 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ZP3P21754 424 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms