RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CD79AP11912 226 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 NQO2P16083 231 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 TBC1D3GQ6DHY5 549 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 C12orf40Q86WS4 652 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 LRRC25Q8N386 305 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF676Q8N7Q3 588 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 COX18Q8N8Q8 333 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 CCDC107Q8WV48 283 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PHYHIPLQ96FC7 376 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PIK3IP1Q96FE7 263 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZC3H10Q96K80 434 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 NRIP2Q9BQI9 281 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ALG12Q9BV10 488 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF350Q9GZX5 532 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 CD1CP29017 333 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 PBX2P40425 430 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 MNDAP41218 407 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 CDKN2AP42771 156 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 LBX1P52954 281 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 SKP1P63208 163 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 TMEM35AQ53FP2 167 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 LEG1Q6P5S2 330 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 LRRC69Q6ZNQ3 347 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 BPIFB2Q8N4F0 458 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 PAQR4Q8N4S7 273 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 PHYHIPQ92561 330 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 SEC11CQ9BY50 192 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 PRR13Q9NZ81 148 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 GPR34Q9UPC5 381 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 KCNK6Q9Y257 313 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 KNL1Q8NG31 2342 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 A0A0B4J2E0 115 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 A0A1B0GX12 115 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 DBIP07108 87 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 SLC35G4P0C7Q5 338 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF888P0CJ79 500 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 SLC25A4P12235 298 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 VAMP1P23763 118 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 GABRA3P34903 492 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 AIMP2Q13155 320 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 EIF2B1Q14232 305 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 GGTLC2Q14390 218 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 ARHGAP19Q14CB8 494 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 MOGAT2Q3SYC2 334 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF684Q5T5D7 378 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 LINC01590Q5TEZ4 76 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 METRNLQ641Q3 311 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 DBX2Q6ZNG2 339 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 NRROSQ86YC3 692 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 SFTPA1Q8IWL2 248 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 CRIPAKQ8N1N5 446 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 FAM3DQ96BQ1 224 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 RCC2Q9P258 522 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 MSRAQ9UJ68 235 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 GTF2A1LQ9UNN4 478 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 OR1A2Q9Y585 309 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 PCDHGA1Q9Y5H4 931 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 CSAG2Q9Y5P2 127 aa12.19□□□□□ -0.46
CCDC88C-201ENST00000331194 GRXCR1A8MXD5 290 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 NDUFB2O95178 105 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 SOD2P04179 222 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF735P0CB33 412 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 CPMP14384 443 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 EXOSC6Q5RKV6 272 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 MTSS1LQ765P7 747 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 GPX8Q8TED1 209 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 DCUN1D4Q92564 292 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 NKD1Q969G9 470 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 RELTQ969Z4 430 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 ALX4Q9H161 411 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 CERS4Q9HA82 394 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 RHOFQ9HBH0 211 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 RXFP3Q9NSD7 469 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 LAMA1P25391 3075 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 C5orf51A6NDU8 294 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 MSGN1A6NI15 193 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 C1orf196B1AJZ1 125 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 BLOC1S5-TXNDC5H3BN57 136 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 WRBO00258 174 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 CLN5O75503 358 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 THBS1P07996 1170 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 SFTA3P0C7M3 94 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 FAM157CP0CG43 387 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 CPT2P23786 658 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 PGDP52209 483 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 FAM53BQ14153 422 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 DEFB134Q4QY38 66 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 VWA2Q5GFL6 755 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 TCEAL8Q8IYN2 117 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 ADAD2Q8NCV1 583 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 STOML3Q8TAV4 291 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF514Q96K75 400 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 C20orf24Q9BUV8 137 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 PCBD2Q9H0N5 130 aa12.18□□□□□ -0.46
CCDC88C-201ENST00000331194 ELOA3DA6NLF2 546 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-201ENST00000331194 UBE2CO00762 179 aa12.17□□□□□ -0.46
CCDC88C-201ENST00000331194 CCL16O15467 120 aa12.17□□□□□ -0.46
CCDC88C-201ENST00000331194 CD74P04233 296 aa12.17□□□□□ -0.46
CCDC88C-201ENST00000331194 AKR1C4P17516 323 aa12.17□□□□□ -0.46
CCDC88C-201ENST00000331194 CCKBRP32239 447 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms