RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SFXN1Q9H9B4 322 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ACOXLQ9NUZ1 547 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 APOBEC3BQ9UH17 382 aaKnown RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF207O43670 478 aaKnown RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 TPOP07202 933 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 TESK1Q15569 626 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 OR7A5Q15622 319 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 FUNDC1Q8IVP5 155 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 TMEM102Q8N9M5 508 aaPredicted RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 UCK1Q9HA47 277 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 GALNT9Q9HCQ5 603 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 DCTN6O00399 190 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 DBHP09172 617 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 TIMP2P16035 220 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 EPHA5P54756 1037 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 DHRS4L2Q6PKH6 230 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 C15orf39Q6ZRI6 1047 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF534Q76KX8 674 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 DPPA4Q7L190 304 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 AKR7LQ8NHP1 331 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ASB11Q8WXH4 323 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 WRAP73Q9P2S5 460 aaPredicted RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ZGRF1Q86YA3 2104 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 GPR171O14626 319 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 FOLR3P41439 243 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 AMTP48728 403 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 CLLU1Q5K131 121 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 CAPNS2Q96L46 248 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 TRIB1Q96RU8 372 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 GASTP01350 101 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 TNFRSF1BP20333 461 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 GALP22466 123 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OR1D4P47884 311 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 FCRLBQ6BAA4 426 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OR52I1Q8NGK6 324 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 BARHL1Q9BZE3 327 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 HEYLQ9NQ87 328 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 PCDHGA1Q9Y5H4 931 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 ARFGEF3Q5TH69 2177 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF840PA6NDX5 716 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 FAM24AA6NFZ4 105 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OR13C7P0DN81 318 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 ZP2Q05996 745 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SLC10A2Q12908 348 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 GALNT16Q8N428 558 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 RGS13O14921 159 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 F2P00734 622 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 FBXO45P0C2W1 286 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 NAT1P18440 290 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 ARSDP51689 593 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SLC39A7Q92504 469 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 ABCA4P78363 2273 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 PTHLHP12272 177 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 FAM57BQ71RH2 274 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 ZBTB44Q8NCP5 570 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SLC35E1Q96K37 410 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 FYTTD1Q96QD9 318 aaKnown RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OSGIN2Q9Y236 505 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SOWAHBA6NEL2 793 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SELEP16581 610 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 POU3F2P20265 443 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SLC35A2P78381 396 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 DVL3Q92997 716 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OR2A14Q96R47 310 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SGIP1Q9BQI5 828 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 CTDSP1Q9GZU7 261 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OBP2BQ9NPH6 170 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 GDF6Q6KF10 455 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OR51A4Q8NGJ6 313 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OR5K2Q8NHB8 316 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 ISL2Q96A47 359 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SMIM19Q96E16 107 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 CPPED1Q9BRF8 314 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 VSX1Q9NZR4 365 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-201ENST00000328333 EMC9Q9Y3B6 208 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 SNX11Q9Y5W9 270 aa13.19□□□□□ -0.3
COL7A1-201ENST00000328333 OR5H8P0DN80 308 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 CD80P33681 288 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 DAPP51397 102 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 FIGLAQ6QHK4 219 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 METTL27Q8N6F8 245 aaPredicted RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 SIGLEC1Q9BZZ2 1709 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 RRASP10301 218 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 GPM6BQ13491 265 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 NCR3LG1Q68D85 454 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 FCRL6Q6DN72 434 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 PLXDC2Q6UX71 529 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 GJC3Q8NFK1 279 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 RTP3Q9BQQ7 232 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 TPPP3Q9BW30 176 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 SLC17A9Q9BYT1 436 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 CLCF1Q9UBD9 225 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 FZD1Q9UP38 647 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 SGK494L7N484 410 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 AOAHP28039 575 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 MTURNQ8N3F0 131 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 CPEB3Q8NE35 698 aaKnown RBP13.18□□□□□ -0.3
COL7A1-201ENST00000328333 PRSS16Q9NQE7 514 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 GPR31O00270 319 aa13.18□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF593O00488 134 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms