RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 NAA40Q86UY6 237 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 OR4C15Q8NGM1 316 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 GLYATL2Q8WU03 294 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 HLA-CQ95604 372 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 FAM212BQ9NTI7 297 aaPredicted RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 GMEB2Q9UKD1 530 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 KIR2DS5A0A0G2JLQ3 304 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 A0A0G2JNG1 304 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 SNRPGP15A8MWD9 76 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 KIR2DS3K7RE56 304 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 HIST1H1CP16403 213 aaKnown RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 OMGP23515 440 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 EPHA4P54764 986 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 KIR2DS5Q14953 304 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 MLF2Q15773 248 aaPredicted RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 NHLRC1Q6VVB1 395 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 FRMD1Q8N878 549 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 SMIM19Q96E16 107 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 TRMT61AQ96FX7 289 aaKnown RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 CXorf58Q96LI9 332 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 ZNF578Q96N58 590 aaPredicted RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 ELF4Q99607 663 aaPredicted RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 CBLCQ9ULV8 474 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 GPR55Q9Y2T6 319 aaPredicted RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 GREB1Q4ZG55 1949 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 TRPM6Q9BX84 2022 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 ZNF41P51814 821 aaPredicted RBP14.05□□□□□ -0.16
SHH-201ENST00000297261 CCINQ13939 588 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 ERV3-1Q14264 604 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 DEFB133Q30KQ1 61 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 OR4D6Q8NGJ1 314 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 OR5D14Q8NGL3 314 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 TSSK2Q96PF2 358 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 PLEKHJ1Q9NW61 149 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 SPHK1Q9NYA1 384 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 TMEM235A6NFC5 223 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 YY2O15391 372 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 CNR1P21554 472 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 CD79BP40259 229 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 BCL6P41182 706 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 NPY4RP50391 375 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 TMEM71Q6P5X7 295 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 OR4C16Q8NGL9 310 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 FRZBQ92765 325 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 VWCEQ96DN2 955 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 SLC35A4Q96G79 324 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 CCL27Q9Y4X3 112 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 CRABP1P29762 137 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 MECP2P51608 486 aaKnown RBP14.05□□□□□ -0.16
SHH-201ENST00000297261 LGALSLQ3ZCW2 172 aaPredicted RBP14.05□□□□□ -0.16
SHH-201ENST00000297261 TRMT12Q53H54 448 aaKnown RBP14.05□□□□□ -0.16
SHH-201ENST00000297261 OTPQ5XKR4 325 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 PTCRAQ6ISU1 281 aaPredicted RBP14.05□□□□□ -0.16
SHH-201ENST00000297261 ZNF709Q8N972 641 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 LHFPL5Q8TAF8 219 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 C12orf10Q9HB07 376 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 SCPEP1Q9HB40 452 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 PDE7BQ9NP56 450 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 TUBG2Q9NRH3 451 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 ZFP57Q9NU63 452 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 CSAG2Q9Y5P2 127 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 GPR85P60893 370 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 BDH1Q02338 343 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 OR11H7Q8NGC8 314 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 YIPF5Q969M3 257 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 NDRG3Q9UGV2 375 aa14.05□□□□□ -0.16
SHH-201ENST00000297261 A0A0J9YY10 115 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 FAM230AA0A1W2PPH8 454 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 GLAP06280 429 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 SELENOPP49908 381 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 TLE3Q04726 772 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 AGERQ15109 404 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 IAH1Q2TAA2 248 aaPredicted RBP14.04□□□□□ -0.16
SHH-201ENST00000297261 TUSC1Q2TAM9 212 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 GLYR1Q49A26 553 aaPredicted RBP14.04□□□□□ -0.16
SHH-201ENST00000297261 HIST2H3PS2Q5TEC6 136 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 OR5D18Q8NGL1 313 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 PPP1R1CQ8WVI7 109 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 PATE1Q8WXA2 126 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 ZDHHC12Q96GR4 267 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 UBE2ZQ9H832 354 aaPredicted RBP14.04□□□□□ -0.16
SHH-201ENST00000297261 LOC100289279A0A1B0GTE1 492 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 EPOPA6NHQ4 379 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 F5H5K5 113 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 H7C1Q1 480 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 PMP2P02689 132 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 HPXP02790 462 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 MGMTP16455 207 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 CD38P28907 300 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 MAGEB1P43366 347 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 SLC22A25Q6T423 547 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 GABRG1Q8N1C3 465 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 PHF7Q9BWX1 381 aaPredicted RBP14.04□□□□□ -0.16
SHH-201ENST00000297261 SLC52A3Q9NQ40 469 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 NYNRINQ9P2P1 1898 aaKnown RBP14.04□□□□□ -0.16
SHH-201ENST00000297261 CDC14CA4D256 554 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 DIRAS3O95661 229 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 OR13C7P0DN81 318 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 FAM160A2Q8N612 972 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms