RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MARCH8Q5T0T0 291 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 SCG5P05408 212 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 COMMD1Q8N668 190 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 APIPQ96GX9 242 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 HES4Q9HCC6 221 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 CSAG2Q9Y5P2 127 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 DNAJC13O75165 2243 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 C21orf33P30042 268 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 TGFBR1P36897 503 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 MAP2K6P52564 334 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 PLXDC2Q6UX71 529 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 BMP5P22003 454 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 ELAVL4P26378 380 aaKnown RBP12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 OR3A1P47881 315 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 ACOT7LQ6ZUV0 252 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 SLC39A7Q92504 469 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 DUSP13Q9UII6 198 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 FAM166BA8MTA8 275 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 OLIG2Q13516 323 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 SPRYD7Q5W111 196 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 OR2T2Q6IF00 324 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 TMEM106AQ96A25 262 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 AGPAT4Q9NRZ5 378 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF835Q9Y2P0 537 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 ILKQ13418 452 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 AGBL4Q5VU57 503 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 DRAM2Q6UX65 266 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 KIAA1958Q8N8K9 716 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 PNPLA1Q8N8W4 532 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 TAAR6Q96RI8 345 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 CPPED1Q9BRF8 314 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 DIP2CQ9Y2E4 1556 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 GPM6AP51674 278 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 PAX5Q02548 391 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 DGAT2L7PQ6IED9 249 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF573Q86YE8 665 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 FGFBP2Q9BYJ0 223 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 DMAC2Q9NW81 257 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 HS3ST1O14792 307 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 TCRBP04435 133 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 RPS19P39019 145 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 SH3BP2P78314 561 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF787Q6DD87 383 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF785A8K8V0 405 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 LSRQ86X29 649 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF687Q8N1G0 1237 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 H3BVH4 76 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 TOX3O15405 576 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 OR5AL1P0C617 328 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 MS4A2Q01362 244 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 PRR27Q6MZM9 219 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 LETMD1Q6P1Q0 360 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 TOLLIPQ9H0E2 274 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 NCR1O76036 304 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 ANKRD34CP0C6C1 535 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 OR2B8PP59922 312 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 DTWD1Q8N5C7 304 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 OR6M1Q8NGM8 313 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 TRAPPC1Q9Y5R8 145 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 A6NIN4 97 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 GRPP07492 148 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 GIPP09681 153 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 CPEP16870 476 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 EMX1Q04741 257 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 Q3ZCU0 254 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 BCAT2O15382 392 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 LDB3O75112 727 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 SPANXN5Q5MJ07 72 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 RHOXF1Q8NHV9 184 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 C11orf40Q8WZ69 217 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 B3GALT5Q9Y2C3 310 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 SLC45A1Q9Y2W3 748 aa12.87□□□□□ -0.35
CCDC88A-201ENST00000263630 PIK3C2BO00750 1634 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 PPOXP50336 477 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 ERVPABLB-1P60509 514 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 TMEM176BQ3YBM2 270 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 GGNBP1Q5YKI7 109 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 B3GNT8Q7Z7M8 397 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 OR4A4PQ8NGN8 299 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 PLEKHA2Q9HB19 425 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 ARHGEF17Q96PE2 2063 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 FER1L4A9Z1Z3 1794 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 DYNC2LI1Q8TCX1 351 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 FAM3DQ96BQ1 224 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF629Q9UEG4 869 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 NXT1Q9UKK6 140 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 RIMS1Q86UR5 1692 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 HEPACAM2A8MVW5 462 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 PIAS2O75928 621 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 TSPAN31Q12999 210 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 GTDC1Q4AE62 458 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 RPUSD4Q96CM3 377 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 OR2A14Q96R47 310 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 TNFRSF4P43489 277 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 NPY4RP50391 375 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 IL10RAQ13651 578 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 GLYATL3Q5SZD4 288 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 MRPL2Q5T653 305 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 UMODL1-AS1Q8N2C9 162 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 FUBP1Q96AE4 644 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms