RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 EGR4Q05215 589 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 ZNF169Q14929 603 aaPredicted RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 TOMM34Q15785 309 aaPredicted RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 ETFDHQ16134 617 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 MEP1BQ16820 701 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 Q3ZCU0 254 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 OR10K2Q6IF99 312 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 C17orf107Q6ZR85 190 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 TMUB2Q71RG4 321 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 NDUFAF7Q7L592 441 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 PRSS58Q8IYP2 241 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 SLC22A18ASQ8N1D0 253 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 OR2G2Q8NGZ5 317 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 WBP1Q96G27 269 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 MICU1Q9BPX6 476 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 LMF2Q9BU23 707 aaKnown RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 GPN1Q9HCN4 374 aaPredicted RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 PRDM6Q9NQX0 595 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 COA4Q9NYJ1 87 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 ZNF230Q9UIE0 474 aaPredicted RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 RPH3AQ9Y2J0 694 aaPredicted RBP9.1□□□□□ -0.95
LIG3-201ENST00000262327 HS3ST3A1Q9Y663 406 aa9.1□□□□□ -0.95
LIG3-201ENST00000262327 OR2M5A3KFT3 312 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 NPIPB9F8W1W9 429 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 M0QYG6 137 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 ARPC3O15145 178 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 NUDT14O95848 222 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 CD14P08571 375 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 ITGA5P08648 1049 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 AKT2P31751 481 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 POU3F4P49335 361 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 FNTBP49356 437 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 SEC61A1P61619 476 aaKnown RBP9.09□□□□□ -0.95
LIG3-201ENST00000262327 ZNF141Q15928 474 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 ZNF74Q16587 644 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 LRRC37A5PQ49AS3 106 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 BEX5Q5H9J7 111 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 ELFN2Q5R3F8 820 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 FAM74A1Q5RGS3 127 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 SLC16A9Q7RTY1 509 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 OOSP2Q86WS3 158 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 MCATQ8IVS2 390 aaKnown RBP9.09□□□□□ -0.95
LIG3-201ENST00000262327 CLDN23Q96B33 292 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 TSPAN32Q96QS1 320 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 GAL3ST4Q96RP7 486 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 ADOQ96SZ5 270 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 REG4Q9BYZ8 158 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 PNO1Q9NRX1 252 aaKnown RBP9.09□□□□□ -0.95
LIG3-201ENST00000262327 CDV3Q9UKY7 258 aaKnown RBP9.09□□□□□ -0.95
LIG3-201ENST00000262327 RNF215Q9Y6U7 377 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 ASXL3Q9C0F0 2248 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 NAP1L6A6NFF2 107 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 OR4C45A6NMZ5 311 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 ST8SIA5O15466 376 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 WNT11O96014 354 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 PLATP00750 562 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 GIPP09681 153 aaPredicted RBP9.09□□□□□ -0.95
LIG3-201ENST00000262327 TACSTD2P09758 323 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 NUP62P37198 522 aaPredicted RBP9.09□□□□□ -0.95
LIG3-201ENST00000262327 YPEL5P62699 121 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 HHEXQ03014 270 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 KIAA0895LQ68EN5 471 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 FAM122BQ7Z309 247 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 KDM8Q8N371 416 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 NKD1Q969G9 470 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 TAAR8Q969N4 342 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 PRDM9Q9NQV7 894 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 CGGBP1Q9UFW8 167 aaPredicted RBP9.09□□□□□ -0.95
LIG3-201ENST00000262327 OPN4Q9UHM6 478 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 FBXO4Q9UKT5 387 aa9.09□□□□□ -0.95
LIG3-201ENST00000262327 FREM3P0C091 2139 aa9.09□□□□□ -0.96
LIG3-201ENST00000262327 PCNX3Q9H6A9 2034 aa9.09□□□□□ -0.96
LIG3-201ENST00000262327 TMEM272A0A1B0GTI8 110 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 UBE2QL1A1L167 161 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ABHD16AO95870 558 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 RAB40ALP0C0E4 278 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ZP3P21754 424 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 TACR3P29371 465 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 S100A11P31949 105 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 KIR3DL2P43630 455 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 MEOX2P50222 304 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 PRPS1P60891 318 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 RAP2BP61225 183 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 RPS4XP62701 263 aaKnown RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 ATXN7L3Q14CW9 347 aaPredicted RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 WDR38Q5JTN6 314 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 PDSS1Q5T2R2 415 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 OLFML2AQ68BL7 652 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ARMC6Q6NXE6 501 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 DBX2Q6ZNG2 339 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ZNF627Q7L945 461 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 SPEM1Q8N4L4 309 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 RAB40AQ8WXH6 277 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 MRPL48Q96GC5 212 aaKnown RBP9.08□□□□□ -0.96
LIG3-201ENST00000262327 MAP3K3Q99759 626 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 PTDSS2Q9BVG9 487 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 OR8D2Q9GZM6 311 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 ATG5Q9H1Y0 275 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 CHRDQ9H2X0 955 aa9.08□□□□□ -0.96
LIG3-201ENST00000262327 EXO5Q9H790 373 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms