RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ETV7Q9Y603 341 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 STRCQ7RTU9 1775 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 A0A1B0GWA3 101 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 TOX3O15405 576 aaPredicted RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 OR8U9P0C7N5 309 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 PCGF3Q3KNV8 242 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 USP51Q70EK9 711 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 FAM57BQ71RH2 274 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 LRRC28Q86X40 367 aaPredicted RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 PCNPQ8WW12 178 aaKnown RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 JAM3Q9BX67 310 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 SPACA1Q9HBV2 294 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 POMT2Q9UKY4 750 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 FAM96BQ9Y3D0 163 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 EEF1E1-BLOC1S5C9J1V9 151 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 GPR39O43194 453 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 SLC6A12P48065 614 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 SHEQ5VZ18 495 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 GDPD3Q7L5L3 318 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 FAM185AQ8N0U4 392 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 EXD3Q8N9H8 876 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 OR51D1Q8NGF3 324 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 OR52N1Q8NH53 320 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 C4orf36Q96KX1 117 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 ALG12Q9BV10 488 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 NCOR1P1Q9H4R4 102 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 A0A1W2PPK0 400 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 GAPDHSO14556 408 aaPredicted RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 NUDT21O43809 227 aaKnown RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 TNFSF15O95150 251 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 PTBP3O95758 552 aaKnown RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 CD1EP15812 388 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 AKR1C4P17516 323 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 PRAMEF20Q5VT98 475 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 AGBL4Q5VU57 503 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 SFRP4Q6FHJ7 346 aaPredicted RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 SFT2D1Q8WV19 159 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 FRZBQ92765 325 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 MRGPRX4Q96LA9 322 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 HINT2Q9BX68 163 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 OR52A5Q9H2C5 316 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 HRH4Q9H3N8 390 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 ESRP2Q9H6T0 727 aaKnown RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 AKIP1Q9NQ31 210 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 IDSB3KWA1 339 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 NME1P15531 152 aaKnown RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 GPX2P18283 190 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 POU3F3P20264 500 aaPredicted RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 F2RL1P55085 397 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 TMEM196Q5HYL7 178 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 SAPCD1Q5SSQ6 148 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 JMJD6Q6NYC1 403 aaPredicted RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 FNDC9Q8TBE3 224 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 TMEM18Q96B42 140 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 SLC35A4Q96G79 324 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 LMF1Q96S06 567 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 CSF3RQ99062 836 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 RTL8AQ9BWD3 113 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 A0A1W2PPC1 479 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 ZNF593O00488 134 aaPredicted RBP11.72□□□□□ -0.53
USP40-201ENST00000251722 TAPBPO15533 448 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 MBTPS2O43462 519 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 MED6O75586 246 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 PGGT1BP53609 377 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 IHHQ14623 411 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 IQCJQ1A5X6 159 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 TUSC1Q2TAM9 212 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 TMEM31Q5JXX7 168 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 C9orf50Q5SZB4 431 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 SAXO2Q658L1 398 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 LAIR1Q6GTX8 287 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 CGB2Q6NT52 195 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 C1orf87Q8N0U7 546 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 KLHDC1Q8N7A1 406 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 OR51A2Q8NGJ7 313 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 ZNF596Q8TC21 504 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 GLYATL2Q8WU03 294 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 C3orf30Q96M34 536 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 TSSK2Q96PF2 358 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 KATNB1Q9BVA0 655 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 CALHM2Q9HA72 323 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 KCNIP2Q9NS61 270 aa11.72□□□□□ -0.53
USP40-201ENST00000251722 A0A0U1RQS6 177 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 TNFRSF1BP20333 461 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 CD82P27701 267 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 FABP6P51161 128 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 BIDP55957 195 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 HTR4Q13639 388 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 TOMM34Q15785 309 aaPredicted RBP11.71□□□□□ -0.53
USP40-201ENST00000251722 FCRL6Q6DN72 434 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 LILRA6Q6PI73 481 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 SULF2Q8IWU5 870 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 DCUN1D4Q92564 292 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 MARVELD3Q96A59 401 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 DNAJA3Q96EY1 480 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 CHST11Q9NPF2 352 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 DDX60LQ5H9U9 1706 aaKnown RBP11.71□□□□□ -0.53
USP40-201ENST00000251722 DCDC2BA2VCK2 349 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 FRG2CA6NGY1 282 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 FRS3O43559 492 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms