RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C1GALT1C1LP0DN25 315 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 MPLP40238 635 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 HYAL1Q12794 435 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PNCKQ6P2M8 343 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR51E2Q9H255 320 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FNDC4Q9H6D8 234 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 DMAC2Q9NW81 257 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TDRD9Q8NDG6 1382 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF609O15014 1411 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PTPRBP23467 1997 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CD247P20963 164 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 HOXA6P31267 233 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CA5AP35218 305 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 DNAJB13P59910 316 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ELAVL2Q12926 359 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 NTRK3Q16288 839 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OLIG3Q7RTU3 272 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 AMER3Q8N944 861 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR56A4Q8NGH8 313 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 MARVELD1Q9BSK0 173 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ANKRD60Q9BZ19 345 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PDZD7Q9H5P4 517 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CNOT2Q9NZN8 540 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 B4GALT7Q9UBV7 327 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ZNRF3Q9ULT6 936 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 F5H5P2 479 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PRRG2O14669 202 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CPDO75976 1380 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 IFNGR2P38484 337 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 LSM6P62312 80 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RPS27AP62979 156 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FOXK2Q01167 660 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 MLLT11Q13015 90 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PDE7AQ13946 482 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SNRNP35Q16560 246 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RBBP7Q16576 425 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 POU2AF1Q16633 256 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FAM71AQ8IYT1 594 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR13C8Q8NGS7 320 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RRAGCQ9HB90 399 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 N4BP2Q86UW6 1770 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 MAGI1Q96QZ7 1491 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ANKRD20A5PA0PJZ0 165 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CD48P09326 243 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FCGR2AP12318 317 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TACR1P25103 407 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RAP1BP61224 184 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 EIF3IQ13347 325 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GLT8D1Q68CQ7 371 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GALNT10Q86SR1 603 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TCTEX1D1Q8N7M0 179 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PNPLA1Q8N8W4 532 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ACOT4Q8N9L9 421 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 JOSD2Q8TAC2 188 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FEZF2Q8TBJ5 459 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RASL12Q9NYN1 266 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 METTL1Q9UBP6 276 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 A4GNTQ9UNA3 340 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ROS1P08922 2347 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SALL1Q9NSC2 1324 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1B0GVI7 797 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OOEPA6NGQ2 149 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OAS1P00973 400 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CRYGCP07315 174 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ADH4P08319 380 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 BDKRB1P46663 353 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RBBP4Q09028 425 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GAGE1Q13065 139 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM183BQ1AE95 376 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CEACAM21Q3KPI0 293 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SLC35D3Q5M8T2 416 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM201Q5SNT2 666 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF620Q6ZNG0 422 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SLC26A10Q8NG04 563 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ACOT9Q9Y305 439 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SP9P0CG40 484 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 AADACP22760 399 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 XCR1P46094 333 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RAB40BQ12829 278 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF787Q6DD87 383 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GTPBP8Q8N3Z3 284 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR5AN1Q8NGI8 311 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GPR22Q99680 433 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 C19orf24Q9BVV8 132 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CHST11Q9NPF2 352 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GALPQ9UBC7 116 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 WNT16Q9UBV4 365 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 INSIG2Q9Y5U4 225 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PALLDQ8WX93 1383 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CST4P01036 141 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PRNPP04156 253 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GRPP07492 148 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 IL1RNP18510 177 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TBPP20226 339 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 AGXTP21549 392 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FPR2P25090 351 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 F2RP25116 425 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PRDX5P30044 214 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms