RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CEP295Q9C0D2 2601 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 C1QTNF9BB2RNN3 333 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 TAF4O00268 1085 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 SYNGR4O95473 234 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 GPANK1O95872 356 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 C1QTNF9P0C862 333 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 RGS6P49758 472 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 RASGEF1BQ0VAM2 473 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 INAQ16352 499 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 C3AR1Q16581 482 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 CARD17Q5XLA6 110 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 SSX6Q7RTT6 188 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 CDC20BQ86Y33 519 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 RFLNBQ8N5W9 214 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 RNF128Q8TEB7 428 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 INTS14Q96SY0 518 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 YIPF3Q9GZM5 350 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 WDR76Q9H967 626 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 MRPL22Q9NWU5 206 aaKnown RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 ING1Q9UK53 422 aaPredicted RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 MCTS1Q9ULC4 181 aaKnown RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 COPS3Q9UNS2 423 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 LHX6Q9UPM6 363 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 RCE1Q9Y256 329 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 TP53TG5Q9Y2B4 290 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 ACACAQ13085 2346 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 ALPK2Q86TB3 2170 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 IGKV3D-15A0A087WSY6 115 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 AKAP8O43823 692 aaKnown RBP16.36■□□□□ 0.21
CLN3-254ENST00000637050 CD36P16671 472 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 HSF2Q03933 536 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 ACSM1Q08AH1 577 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 TSTQ16762 297 aaKnown RBP16.36■□□□□ 0.21
CLN3-254ENST00000637050 PLEKHN1Q494U1 663 aaPredicted RBP16.36■□□□□ 0.21
CLN3-254ENST00000637050 SLC25A47Q6Q0C1 308 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 SLC16A12Q6ZSM3 486 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 SLC26A10Q8NG04 563 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 ABHD3Q8WU67 409 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 SPRYD4Q8WW59 207 aaPredicted RBP16.36■□□□□ 0.21
CLN3-254ENST00000637050 TMEM54Q969K7 222 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 MNTQ99583 582 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 ISG20L2Q9H9L3 353 aaKnown RBP16.36■□□□□ 0.21
CLN3-254ENST00000637050 ENPP5Q9UJA9 477 aa16.36■□□□□ 0.21
CLN3-254ENST00000637050 AQP7O14520 342 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 WISP2O76076 250 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 HLA-DQA2P01906 255 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 NR2C1P13056 603 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 ZNF133P52736 654 aaPredicted RBP16.35■□□□□ 0.21
CLN3-254ENST00000637050 CXADRP78310 365 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 C19orf48Q6RUI8 117 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 P2RY8Q86VZ1 359 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 OR6N2Q8NGY6 317 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 RAB2BQ8WUD1 216 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 MCHR2Q969V1 340 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 INTS12Q96CB8 462 aaKnown RBP16.35■□□□□ 0.21
CLN3-254ENST00000637050 FOXN4Q96NZ1 517 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 PRDM14Q9GZV8 571 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 KLHL9Q9P2J3 617 aa16.35■□□□□ 0.21
CLN3-254ENST00000637050 DMXL2Q8TDJ6 3036 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 CCRL2O00421 344 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 GABARAPO95166 117 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 GAAP10253 952 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 NTF4P34130 210 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 SELENOPP49908 381 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 ACTA2P62736 377 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 ACTG2P63267 376 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 SSX1Q16384 188 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 CNPY1Q3B7I2 92 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 CDONQ4KMG0 1287 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 LRFN4Q6PJG9 635 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 UNQ6494/PRO21346Q6UXR6 183 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 CHMP1BQ7LBR1 199 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 GLB1L2Q8IW92 636 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 FNDC9Q8TBE3 224 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 PNPLA2Q96AD5 504 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 TMEM45BQ96B21 275 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 GLTPQ9NZD2 209 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 FOXD3Q9UJU5 478 aaPredicted RBP16.34■□□□□ 0.21
CLN3-254ENST00000637050 ZMIZ1Q9ULJ6 1067 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 CAMK2AQ9UQM7 478 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 ZNF407Q9C0G0 2248 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 ZNF670-ZNF695F2Z2N8 137 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 H3BMQ9 156 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 ZNF593O00488 134 aaPredicted RBP16.34■□□□□ 0.21
CLN3-254ENST00000637050 AQP8O94778 261 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 LALBAP00709 142 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 MT-ND5P03915 603 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 HRGP04196 525 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 QDPRP09417 244 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 PSKH1P11801 424 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 CPEP16870 476 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 CSNK1A1P48729 337 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 BDH1Q02338 343 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 TPBGQ13641 420 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 DPY19L4Q7Z388 723 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 ATCAYQ86WG3 371 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 SYS1Q8N2H4 156 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 NSMAFQ92636 917 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 ZNF775Q96BV0 537 aaPredicted RBP16.34■□□□□ 0.21
CLN3-254ENST00000637050 C12orf43Q96C57 262 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms