RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 RPS15AP62244 130 aaKnown RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 POLR2GP62487 172 aaKnown RBP eCLIP12.79□□□□□ -0.36
LDB3-209ENST00000623056 ZNF234Q14588 700 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 ISXQ2M1V0 245 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 PLEKHN1Q494U1 663 aaPredicted RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 C3orf33Q6P1S2 294 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 ZCCHC12Q6PEW1 402 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 CDC20BQ86Y33 519 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 CACUL1Q86Y37 369 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 TMEFF1Q8IYR6 380 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 GTPBP8Q8N3Z3 284 aaPredicted RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 NT5CQ8TCD5 201 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 MCHR2Q969V1 340 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 ZBTB8AQ96BR9 441 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 LRRC3BQ96PB8 259 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 NKX3-1Q99801 234 aaPredicted RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 LMAN2LQ9H0V9 348 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 POLE3Q9NRF9 147 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 MYEF2Q9P2K5 600 aaKnown RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 EDARQ9UNE0 448 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 PLEKHA6Q9Y2H5 1048 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 SLC27A6Q9Y2P4 619 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 LTBP2Q14767 1821 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 MEX3AA1L020 520 aaKnown RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 SULT1C2O00338 296 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 SCAMP1O15126 338 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 SLC35G6P0C7Q6 338 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 ZNF735P0CB33 412 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 NR0B1P51843 470 aaKnown RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 RPS4XP62701 263 aaKnown RBP12.79□□□□□ -0.36
LDB3-209ENST00000623056 DMWDQ09019 674 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 MGAT2Q10469 447 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 FAM53BQ14153 422 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 PRICKLE4Q2TBC4 344 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 FAM122BQ7Z309 247 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 JAZF1Q86VZ6 243 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 PRSS35Q8N3Z0 413 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 TMEM52Q8NDY8 209 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 EDEM2Q9BV94 578 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 INSL6Q9Y581 213 aa12.79□□□□□ -0.36
LDB3-209ENST00000623056 TVP23AA6NH52 213 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 TMEM200CA6NKL6 621 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 TMEM212A6NML5 194 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 GPR89AB7ZAQ6 455 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 CXCL14O95715 111 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 ADH1AP07327 375 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 GPR89BP0CG08 455 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 GPR143P51810 404 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SCGB2B2Q4G0G5 96 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 PRAMEF17Q5VTA0 474 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 NDUFAF7Q7L592 441 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 EXD3Q8N9H8 876 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 INO80EQ8NBZ0 244 aaPredicted RBP12.78□□□□□ -0.36
LDB3-209ENST00000623056 OR4E2Q8NGC2 313 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 OR5AP2Q8NGF4 316 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 OR13C8Q8NGS7 320 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 NANPQ8TBE9 248 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 ARL11Q969Q4 196 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 CNTNAP3BQ96NU0 1288 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 LMF1Q96S06 567 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 TIMM29Q9BSF4 260 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 CRB3Q9BUF7 120 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 HDAC8Q9BY41 377 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SLC17A5Q9NRA2 495 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 NOTCH4Q99466 2003 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 A0A087WUJ7 227 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 FAM25EA8MYX2 175 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SLC17A2O00624 439 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 KCNAB3O43448 404 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 FGF18O76093 207 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 NKX2-2O95096 273 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SMIM10L1P0DMW3 83 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 CD79AP11912 226 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 PRKXP51817 358 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SLC25A1P53007 311 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 PDZK1IP1Q13113 114 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SMAD2Q15796 467 aaKnown RBP12.78□□□□□ -0.36
LDB3-209ENST00000623056 FAM209BQ5JX69 171 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 FBXO42Q6P3S6 717 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 FBXO46Q6PJ61 603 aaPredicted RBP12.78□□□□□ -0.36
LDB3-209ENST00000623056 ZNF627Q7L945 461 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 BPIFB2Q8N4F0 458 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 OR4A4PQ8NGN8 299 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 TSEN15Q8WW01 171 aaKnown RBP12.78□□□□□ -0.36
LDB3-209ENST00000623056 RAB7BQ96AH8 199 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SMIM10Q96HG1 83 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 GAL3ST1Q99999 423 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 TMEM231Q9H6L2 316 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SRA1Q9HD15 236 aaKnown RBP12.78□□□□□ -0.36
LDB3-209ENST00000623056 TREM1Q9NP99 234 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 SLC22A11Q9NSA0 550 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 MBD2Q9UBB5 411 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 LAMP5Q9UJQ1 280 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 FARSAQ9Y285 508 aaKnown RBP12.78□□□□□ -0.36
LDB3-209ENST00000623056 CHD7Q9P2D1 2997 aa12.78□□□□□ -0.36
LDB3-209ENST00000623056 GRXCR1A8MXD5 290 aa12.77□□□□□ -0.36
LDB3-209ENST00000623056 DCTN6O00399 190 aa12.77□□□□□ -0.36
LDB3-209ENST00000623056 IGKV1D-16P01601 117 aa12.77□□□□□ -0.36
LDB3-209ENST00000623056 HEXAP06865 529 aa12.77□□□□□ -0.36
LDB3-209ENST00000623056 ZNF28P17035 718 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms