RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	ACSM3	Q53FZ2	586 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	IDNK	Q5T6J7	187 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	ARL9	Q6T311	187 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	KCTD20	Q7Z5Y7	419 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	CEACAM19	Q7Z692	300 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	NOXA1	Q86UR1	476 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	NR2C2AP	Q86WQ0	139 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	STK35	Q8TDR2	534 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	CAPSL	Q8WWF8	208 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	ERMAP	Q96PL5	475 aa	Predicted RBP	10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	DDO	Q99489	341 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	FAM173A	Q9BQD7	235 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	C7orf50	Q9BRJ6	194 aa	Known RBP	10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	NMNAT2	Q9BZQ4	307 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	SLA2	Q9H6Q3	261 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	NRIP3	Q9NQ35	241 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	SERINC1	Q9NRX5	453 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	DDX28	Q9NUL7	540 aa	Known RBP	10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	COPZ2	Q9P299	210 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	EXTL2	Q9UBQ6	330 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	CEP295	Q9C0D2	2601 aa		10.51	□□□□□ -0.73
VRK3-223	ENST00000601341	TRAV36DV7	A0A075B6V5	113 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341		A0A0B4J293	547 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341		A0A0G2JMM0	328 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341		A0A1W2PPB8	328 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341		A0A1W2PRS3	328 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	TMEM72	A0PK05	275 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	KIR3DP1	A8MWS1	328 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341		J3QLW9	94 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	RRP8	O43159	456 aa	Known RBP	10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	ZNF208	O43345	1280 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	OR7A10	O76100	309 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	WISP1	O95388	367 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	UCHL1	P09936	223 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	PSKH1	P11801	424 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	CD46	P15529	392 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	ZNF19	P17023	458 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	RAB3B	P20337	219 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	FKBP2	P26885	142 aa	Known RBP	10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	SHC1	P29353	583 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	SLC25A1	P53007	311 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	SLC16A1	P53985	500 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	RAG2	P55895	527 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	GPR85	P60893	370 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	SIRPA	P78324	504 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	ARG2	P78540	354 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	CDK5R1	Q15078	307 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	ZNF74	Q16587	644 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	SLC25A25	Q6KCM7	469 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	C10orf53	Q8N6V4	93 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	MDS2	Q8NDY4	140 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	FDCSP	Q8NFU4	85 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	GRPEL2	Q8TAA5	225 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	GHSR	Q92847	366 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	TRIM63	Q969Q1	353 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	RFT1	Q96AA3	541 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	KTI12	Q96EK9	354 aa	Predicted RBP	10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	RNF170	Q96K19	258 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	NDEL1	Q9GZM8	345 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	ZFP64	Q9NPA5	681 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	DEPP	Q9NTK1	212 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	MRPL39	Q9NYK5	338 aa	Known RBP	10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	DKKL1	Q9UK85	242 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	BOK	Q9UMX3	212 aa	Predicted RBP	10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	MED13	Q9UHV7	2174 aa		10.5	□□□□□ -0.73
VRK3-223	ENST00000601341	ZC3H12D	A2A288	527 aa	Known RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	CTDSPL	O15194	276 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	OR2T1	O43869	369 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	NPIPB7	O75200	414 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	CEACAM4	O75871	244 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	NCR1	O76036	304 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	TPPP	O94811	219 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	UBL3	O95164	117 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SP1	P08047	785 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	ADRB1	P08588	477 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	HIST1H1C	P16403	213 aa	Known RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	PYCR1	P32322	319 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	EIF2S3	P41091	472 aa	Known RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	MMP15	P51511	669 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	OR12D2	P58182	307 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	RIPPLY1	Q0D2K3	151 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	INSL4	Q14641	139 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SF3B4	Q15427	424 aa	Known RBP eCLIP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	EMC4	Q5J8M3	183 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	FAM69A	Q5T7M9	428 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	C1orf140	Q5VVS0	124 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	UNQ9370/PRO34162	Q6UXP9	181 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SPACA3	Q8IXA5	215 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	ASCC1	Q8N9N2	400 aa	Known RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	NPEPL1	Q8NDH3	523 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	OR2M7	Q8NG81	312 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	OR52E2	Q8NGJ4	325 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	POC1B	Q8TC44	478 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	TAAR8	Q969N4	342 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	DDIT4L	Q96D03	193 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	C5orf34	Q96MH7	638 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	MNT	Q99583	582 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	WAC	Q9BTA9	647 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	GON7	Q9BXV9	100 aa		10.49	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms