RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 BRD7Q9NPI1 651 aa12.97□□□□□ -0.33
VRK3-217ENST00000599538 SDHAF3Q9NRP4 125 aa12.97□□□□□ -0.33
VRK3-217ENST00000599538 ADAM30Q9UKF2 790 aa12.97□□□□□ -0.33
VRK3-217ENST00000599538 CELSR3Q9NYQ7 3312 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 NPIPA5E9PKD4 350 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 RAMP1O60894 148 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 EIF2B2P49770 351 aaKnown RBP12.96□□□□□ -0.33
VRK3-217ENST00000599538 CLDN12P56749 244 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 OR2B6P58173 313 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 WDR38Q5JTN6 314 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 TRIQKQ629K1 86 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 NHLRC1Q6VVB1 395 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 FADS6Q8N9I5 356 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 SCAIQ8N9R8 606 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 KCNK17Q96T54 332 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 KCNJ15Q99712 375 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 POTEKPQ9BYX7 375 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 SLC22A4Q9H015 551 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 SERINC1Q9NRX5 453 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 NPIPA1Q9UND3 350 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 SLC22A13Q9Y226 551 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 RPH3AQ9Y2J0 694 aaPredicted RBP12.96□□□□□ -0.33
VRK3-217ENST00000599538 LOXL2Q9Y4K0 774 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 TMEM14AQ9Y6G1 99 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 KNTC1P50748 2209 aa12.96□□□□□ -0.33
VRK3-217ENST00000599538 TRABD2BA6NFA1 517 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 ADRA2CP18825 462 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 PTBP1P26599 531 aaKnown RBP eCLIP12.95□□□□□ -0.34
VRK3-217ENST00000599538 SFTPDP35247 375 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 C19orf18Q8NEA5 215 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 LGALS14Q8TCE9 139 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 GNRHR2Q96P88 292 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 OR5B2Q96R09 309 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 WACQ9BTA9 647 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 ABHD6Q9BV23 337 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 R4GN57 208 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 PCSK5Q92824 1860 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 TRAV8-7A0A075B6U6 113 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 NSG1A0A0A6YYJ2 146 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 A0A0B4J293 547 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 TRBV5-5A0A0J9YX44 114 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 B4E171 279 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.95□□□□□ -0.34
VRK3-217ENST00000599538 DOK2O60496 412 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 FOLR3P41439 243 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 TSPAN7P41732 249 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 P2RY4P51582 365 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 BIDP55957 195 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 MFGE8Q08431 387 aaPredicted RBP12.95□□□□□ -0.34
VRK3-217ENST00000599538 SLC17A1Q14916 467 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 MFSD13AQ14CX5 517 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 EXT1Q16394 746 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 Q499Y3 187 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 OR7E24Q6IFN5 339 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 LINC00346Q8IVM7 164 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 UBQLNLQ8IYU4 475 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 ZNF676Q8N7Q3 588 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 DNAAF1Q8NEP3 725 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 OR4K17Q8NGC6 315 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 C4orf45Q96LM5 186 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 MNTQ99583 582 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 MFRPQ9BY79 579 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 ALKBH4Q9NXW9 302 aa12.95□□□□□ -0.34
VRK3-217ENST00000599538 A0A1W2PNU3 283 aaPredicted RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 SLC43A1O75387 559 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 FAM157BP0CG42 384 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 PTGS2P35354 604 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 TALDO1P37837 337 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 PITPNBP48739 271 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 GLO1Q04760 184 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 Q0VFX4 171 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 SNTA1Q13424 505 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 EIF2B1Q14232 305 aaKnown RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 RNASE12Q5GAN4 147 aaKnown RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 DCAF12Q5T6F0 453 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 AGAP6Q5VW22 663 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 SLC18B1Q6NT16 456 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 C3orf33Q6P1S2 294 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 STAC2Q6ZMT1 411 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 ASB18Q6ZVZ8 466 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 IZUMO1Q8IYV9 350 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 ZNF679Q8IYX0 411 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 SLC26A10Q8NG04 563 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 M1APQ8TC57 530 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 TRIM63Q969Q1 353 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 FRMD6Q96NE9 622 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 AGAP4Q96P64 663 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 DCBLD2Q96PD2 775 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 PISDQ9UG56 409 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 FBXL3Q9UKT7 428 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 IFITM5A6NNB3 132 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 CDX4O14627 284 aaPredicted RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 TP53I11O14683 189 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 ZNF883P0CG24 379 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 TCN2P20062 427 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 RBMS1P29558 406 aaKnown RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 CRABP1P29762 137 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 OTX2P32243 289 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 MAP2K3P46734 347 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 SF3A2Q15428 464 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms