RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CASKO14936 926 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 LYZL6O75951 148 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 EPXP11678 715 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 OSMP13725 252 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 NOS3P29474 1203 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 CCKARP32238 428 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 ZNF84P51523 738 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 KRR1Q13601 381 aaKnown RBP18.07■□□□□ 0.48
VPS53-210ENST00000571456 GABRA6Q16445 453 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 C10orf128Q5T292 105 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 CARD17Q5XLA6 110 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 KLHL17Q6TDP4 642 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 IGFN1Q86VF2 1251 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 PQLC1Q8N2U9 271 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 LNX2Q8N448 690 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 MUCL1Q96DR8 90 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 ERMAPQ96PL5 475 aaPredicted RBP18.07■□□□□ 0.48
VPS53-210ENST00000571456 RBM4BQ9BQ04 359 aaKnown RBP18.07■□□□□ 0.48
VPS53-210ENST00000571456 RBM4Q9BWF3 364 aaKnown RBP18.07■□□□□ 0.48
VPS53-210ENST00000571456 PAPOLBQ9NRJ5 636 aaKnown RBP18.07■□□□□ 0.48
VPS53-210ENST00000571456 TBC1D23Q9NUY8 699 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 AMDHD2Q9Y303 409 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 IER3IP1Q9Y5U9 82 aa18.07■□□□□ 0.48
VPS53-210ENST00000571456 OR5H1A6NKK0 313 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 DHHO43323 396 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 ESRRGP62508 458 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 CD47Q08722 323 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 CEACAM16Q2WEN9 425 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 KLHL24Q6TFL4 600 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 DPPA2Q7Z7J5 298 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 OR1K1Q8NGR3 316 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 S100PBPQ96BU1 408 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 Q96M85 177 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 PKP2Q99959 881 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 SEMA6AQ9H2E6 1030 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 LIME1Q9H400 295 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 EGLN3Q9H6Z9 239 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 OAZ3Q9UMX2 235 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 ADAM18Q9Y3Q7 739 aa18.06■□□□□ 0.48
VPS53-210ENST00000571456 TEX13CA0A0J9YWL9 993 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 PRSS37A4D1T9 235 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 H3BN98 237 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 BHLHE40O14503 412 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 ARHGEF9O43307 516 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 PPP1R3DO95685 299 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 WNT11O96014 354 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 QDPRP09417 244 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 DNASE1P24855 282 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 GUCA1AP43080 201 aaPredicted RBP18.05■□□□□ 0.48
VPS53-210ENST00000571456 DAZAP2Q15038 168 aaPredicted RBP18.05■□□□□ 0.48
VPS53-210ENST00000571456 KDM4DQ6B0I6 523 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 SLC27A4Q6P1M0 643 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 DNM1P34Q6PK57 102 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 JAZF1Q86VZ6 243 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 HS3ST5Q8IZT8 346 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 ICA1LQ8NDH6 482 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 HDAC2Q92769 488 aaKnown RBP18.05■□□□□ 0.48
VPS53-210ENST00000571456 MCHR2Q969V1 340 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 NMD3Q96D46 503 aaKnown RBP18.05■□□□□ 0.48
VPS53-210ENST00000571456 C9orf16Q9BUW7 83 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 TSSK6Q9BXA6 273 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 C8orf4Q9NR00 106 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 KRT84Q9NSB2 600 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 VSX1Q9NZR4 365 aaPredicted RBP18.05■□□□□ 0.48
VPS53-210ENST00000571456 REV1Q9UBZ9 1251 aa18.05■□□□□ 0.48
VPS53-210ENST00000571456 RAD51DO75771 328 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 FARS2O95363 451 aaKnown RBP18.04■□□□□ 0.48
VPS53-210ENST00000571456 RENP00797 406 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 IFNGP01579 166 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 CDH2P19022 906 aaPredicted RBP18.04■□□□□ 0.48
VPS53-210ENST00000571456 NPR2P20594 1047 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 PRKACGP22612 351 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 CRABP1P29762 137 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 RUNX1T1Q06455 604 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 SLC36A3Q495N2 470 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 MESTQ5EB52 335 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 LRFN4Q6PJG9 635 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 LINGO2Q7L985 606 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 C18orf12Q96KH6 178 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 WFIKKN1Q96NZ8 548 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 FOXB1Q99853 325 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 PRRG3Q9BZD7 231 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 SLC17A5Q9NRA2 495 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 IL20RAQ9UHF4 553 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 KLHL21Q9UJP4 597 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 EDARQ9UNE0 448 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 ORC6Q9Y5N6 252 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 MXRA5Q9NR99 2828 aa18.04■□□□□ 0.48
VPS53-210ENST00000571456 ARPC4-TTLL3A0A0A6YYG9 625 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 SLC22A23A1A5C7 686 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 TP53P04637 393 aaPredicted RBP18.03■□□□□ 0.48
VPS53-210ENST00000571456 HMGN1P05114 100 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 CRYGSP22914 178 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 GRK5P34947 590 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 DAPP51397 102 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 PPP2R2BQ00005 443 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 MYBPC1Q00872 1141 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 PPA1Q15181 289 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 PHYHD1Q5SRE7 291 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 CLEC9AQ6UXN8 241 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms