RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 HSPB2Q16082 182 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 PLPPR5Q32ZL2 321 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 KRT74Q7RTS7 529 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 POC1BQ8TC44 478 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 ADAMTS14Q8WXS8 1223 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 DDIT4LQ96D03 193 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 ZNF486Q96H40 463 aaPredicted RBP18.21■□□□□ 0.5
CLN3-230ENST00000568076 DMRTB1Q96MA1 342 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 CMTM3Q96MX0 182 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 RASL10BQ96S79 203 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 LIN7BQ9HAP6 207 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 TCF7L1Q9HCS4 588 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 WIF1Q9Y5W5 379 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 CACNG2Q9Y698 323 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 TRAV8-7A0A075B6U6 113 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 IGLV3-32A0A0A0MS00 114 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 CCL4P13236 92 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 BLVRAP53004 296 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 ADAM8P78325 824 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 FMODQ06828 376 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 TRIM61Q5EBN2 209 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 SLC18B1Q6NT16 456 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 FDX2Q6P4F2 183 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 FCRLAQ7L513 359 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 PRSS45Q7RTY3 260 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 BPHLQ86WA6 291 aaPredicted RBP18.2■□□□□ 0.5
CLN3-230ENST00000568076 C1orf210Q8IVY1 113 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 ZNF679Q8IYX0 411 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 ZNF248Q8NDW4 579 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 ELP5Q8TE02 316 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 ASB17Q8WXJ9 295 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 ZC3H10Q96K80 434 aaKnown RBP18.2■□□□□ 0.5
CLN3-230ENST00000568076 COMMD4Q9H0A8 199 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 METTL7AQ9H8H3 244 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 WDR54Q9H977 334 aa18.2■□□□□ 0.5
CLN3-230ENST00000568076 PNPP00491 289 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 PITPNAQ00169 270 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 ROM1Q03395 351 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 RASGEF1BQ0VAM2 473 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 C19orf57Q0VDD7 668 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 MFSD13AQ14CX5 517 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 NTRK2Q16620 822 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 SLC25A53Q5H9E4 307 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 HACD4Q5VWC8 232 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 MDGA2Q7Z553 956 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 DNAAF1Q8NEP3 725 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 GPR148Q8TDV2 347 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 FYTTD1Q96QD9 318 aaKnown RBP18.19■□□□□ 0.5
CLN3-230ENST00000568076 BEX2Q9BXY8 128 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 DEFB126Q9BYW3 111 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 RANGRFQ9HD47 186 aaPredicted RBP18.19■□□□□ 0.5
CLN3-230ENST00000568076 CHST11Q9NPF2 352 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 OR5V1Q9UGF6 321 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 LIPT2A6NK58 231 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 CELA2AP08217 269 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 CYC1P08574 325 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 MSX1P28360 303 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 CRABP1P29762 137 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 ZNF41P51814 821 aaPredicted RBP18.19■□□□□ 0.5
CLN3-230ENST00000568076 TLE3Q04726 772 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 ZFP36L1Q07352 338 aaKnown RBP18.19■□□□□ 0.5
CLN3-230ENST00000568076 TEX30Q5JUR7 227 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 MTFR2Q6P444 385 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 SLC22A8Q8TCC7 542 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 RNF128Q8TEB7 428 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 PPP1R14AQ96A00 147 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 TMEM106AQ96A25 262 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 CREB3L1Q96BA8 519 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 SPACA9Q96E40 222 aaPredicted RBP18.19■□□□□ 0.5
CLN3-230ENST00000568076 ABHD6Q9BV23 337 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 MOV10Q9HCE1 1003 aaKnown RBP18.19■□□□□ 0.5
CLN3-230ENST00000568076 MED29Q9NX70 200 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 FBXL2Q9UKC9 423 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 SLC22A13Q9Y226 551 aa18.19■□□□□ 0.5
CLN3-230ENST00000568076 RBMX2Q9Y388 322 aaKnown RBP18.19■□□□□ 0.5
CLN3-230ENST00000568076 LOC102723996A0A087X1L8 192 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 IGKV1D-43A0A0B4J1Z2 117 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 TRABD2BA6NFA1 517 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 NPIPA5E9PKD4 350 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 INMT-MINDY4F8WBC2 141 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 ORC5O43913 435 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 ZNF432O94892 652 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 CER1O95813 267 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 UMODP07911 640 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 TCEA1P23193 301 aaKnown RBP18.18■□□□□ 0.5
CLN3-230ENST00000568076 PTGS2P35354 604 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 RAB25P57735 213 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 FOXK1P85037 733 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 HSF1Q00613 529 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 POU3F1Q03052 451 aaPredicted RBP18.18■□□□□ 0.5
CLN3-230ENST00000568076 GLO1Q04760 184 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 BTBD16Q32M84 506 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 FAM198BQ6UWH4 519 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 BAIAP2L2Q6UXY1 529 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 NCCRP1Q6ZVX7 275 aaPredicted RBP18.18■□□□□ 0.5
CLN3-230ENST00000568076 SIAH3Q8IW03 269 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 MRGPRX4Q96LA9 322 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 KCNK17Q96T54 332 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 POTEKPQ9BYX7 375 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 SLITRK2Q9H156 845 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms