RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 LIMS1P48059 325 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 EFNA4P52798 201 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 FOXG1P55316 489 aaPredicted RBP11.86□□□□□ -0.51
SMAD3-214ENST00000560402 PRPS1P60891 318 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 CDC42P60953 191 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 CXCR4P61073 352 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 TEKQ02763 1124 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 ST3GAL3Q11203 375 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 DGCR6Q14129 220 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 LAPTM4AQ15012 233 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 TRAM2Q15035 370 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 C6orf141Q5SZD1 244 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 TSPO2Q5TGU0 170 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 RNF220Q5VTB9 566 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 ZNF773Q6PK81 442 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 HMGN2P46Q86SG4 172 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 WDR31Q8NA23 367 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 AQP11Q8NBQ7 271 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 OR9K2Q8NGE7 335 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 SLC38A4Q969I6 547 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 ARHGDIGQ99819 225 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 TAPBPLQ9BX59 468 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 ADAM19Q9H013 955 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 NMNAT1Q9HAN9 279 aaPredicted RBP11.86□□□□□ -0.51
SMAD3-214ENST00000560402 NDRG4Q9ULP0 352 aaKnown RBP11.86□□□□□ -0.51
SMAD3-214ENST00000560402 ZNF443Q9Y2A4 671 aaPredicted RBP11.86□□□□□ -0.51
SMAD3-214ENST00000560402 FKBP7Q9Y680 259 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 ATP23Q9Y6H3 246 aa11.86□□□□□ -0.51
SMAD3-214ENST00000560402 ZC3H12DA2A288 527 aaKnown RBP11.85□□□□□ -0.51
SMAD3-214ENST00000560402 FRS3O43559 492 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 OR10H3O60404 316 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 MITFO75030 526 aaPredicted RBP11.85□□□□□ -0.51
SMAD3-214ENST00000560402 FAM157CP0CG43 387 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 PTNP21246 168 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 CBLP22681 906 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 COPZ1P61923 177 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 COX10Q12887 443 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 C9orf135Q5VTT2 229 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 WBP2NLQ6ICG8 309 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 GPR141Q7Z602 305 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 TSEN54Q7Z6J9 526 aaKnown RBP11.85□□□□□ -0.51
SMAD3-214ENST00000560402 ZNF525Q8N782 197 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 C10orf105Q8TEF2 133 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 ZNF566Q969W8 418 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 HRASLS5Q96KN8 279 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 TEX12Q9BXU0 123 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 PRRG3Q9BZD7 231 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 PCDHGB5Q9Y5G0 923 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 ALPK2Q86TB3 2170 aa11.85□□□□□ -0.51
SMAD3-214ENST00000560402 TRIM64CA6NLI5 447 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 RNF212BA8MTL3 300 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 A8MVM7 634 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 ZNF587BE7ETH6 402 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 J3KTA2 159 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 M0R3H8 397 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 NDUFS8O00217 210 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 SLC1A7O00341 560 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 OR5F1O95221 314 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 TFAP2AP05549 437 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 GGT2P36268 569 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 SNRPD2P62316 118 aaKnown RBP11.84□□□□□ -0.51
SMAD3-214ENST00000560402 CD47Q08722 323 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 OR7A5Q15622 319 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 C3orf36Q3SXR2 165 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 ZNF836Q6ZNA1 936 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 AAED1Q7RTV5 226 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 SATL1Q86VE3 508 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 SVOPQ8N4V2 548 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 IPCEF1Q8WWN9 437 aaPredicted RBP11.84□□□□□ -0.51
SMAD3-214ENST00000560402 TMEM158Q8WZ71 300 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 SLC35B4Q969S0 331 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 DGCR14Q96DF8 476 aaKnown RBP11.84□□□□□ -0.51
SMAD3-214ENST00000560402 MYCBPQ99417 103 aaPredicted RBP11.84□□□□□ -0.51
SMAD3-214ENST00000560402 KCNS3Q9BQ31 491 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 KATNB1Q9BVA0 655 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 DGCR6LQ9BY27 220 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 MYOZ1Q9NP98 299 aaPredicted RBP11.84□□□□□ -0.51
SMAD3-214ENST00000560402 RHCGQ9UBD6 479 aa11.84□□□□□ -0.51
SMAD3-214ENST00000560402 FBXO9Q9UK97 447 aaPredicted RBP11.84□□□□□ -0.51
SMAD3-214ENST00000560402 ARPC4-TTLL3A0A0A6YYG9 625 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 ATP6V1G2-DDX39BF2Z307 99 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 GPRIN2O60269 458 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 FMO6PO60774 539 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 FAM20BO75063 409 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 KRT33AO76009 404 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 AKR7A3O95154 331 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 CRHBPP24387 322 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 ACAA2P42765 397 aaKnown RBP11.83□□□□□ -0.52
SMAD3-214ENST00000560402 ALDH3B2P48448 385 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 ISL1P61371 349 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 MAD2L1BPQ15013 274 aaPredicted RBP11.83□□□□□ -0.52
SMAD3-214ENST00000560402 TMEM225Q6GV28 225 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 GPAT4Q86UL3 456 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 VRK2Q86Y07 508 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 CADM2Q8N3J6 435 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 TMEM99Q8N816 258 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 OR9Q2Q8NGE9 314 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 OR6T1Q8NGN1 323 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 FAM81AQ8TBF8 368 aa11.83□□□□□ -0.52
SMAD3-214ENST00000560402 STK35Q8TDR2 534 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms