RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 ETV7Q9Y603 341 aa6.53□□□□□ -1.36
USP3-210ENST00000559192 A0A0A6YYD5 115 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 CDC14CA4D256 554 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ZNF850A8MQ14 1090 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 HIDE1A8MVS5 230 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 IDSB3KWA1 339 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 KLF8O95600 359 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 GNRH1P01148 92 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 CD3DP04234 171 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 GAAP10253 952 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 RNH1P13489 461 aaKnown RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 ARRB1P49407 418 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 MEF2DQ14814 521 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 PRSS53Q2L4Q9 553 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 CDONQ4KMG0 1287 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 SOHLH1Q5JUK2 328 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 HIST2H3AQ71DI3 136 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 OR51T1Q8NGJ9 327 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ALG14Q96F25 216 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ZNF75AQ96N20 296 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 C20orf24Q9BUV8 137 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 SIRT3Q9NTG7 399 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 LINC00862A6NCI5 91 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ANGPTL7O43827 346 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 LPLP06858 475 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 EMDP50402 254 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ACY1Q03154 408 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 MAMSTRQ6ZN01 415 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 TRILQ7L0X0 811 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 MAMDC2Q7Z304 686 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 CLRN3Q8NCR9 226 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 OR4C16Q8NGL9 310 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 WDR89Q96FK6 387 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 HHIPL1Q96JK4 782 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 NUDT9Q9BW91 350 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 PARP12Q9H0J9 701 aaKnown RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 C6orf106Q9H6K1 298 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 GCM1Q9NP62 436 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 FBXO4Q9UKT5 387 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 GAB2Q9UQC2 676 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 INSL6Q9Y581 213 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 URGCP-MRPS24S4R325 110 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 LRP5LA4QPB2 252 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 TMEM212A6NML5 194 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 H0Y8G0 127 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 CDC42EP2O14613 210 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 PMS2P2O95744 297 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 HPXP02790 462 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 PNMTP11086 282 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 HOXB3P14651 431 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 SPI1P17947 270 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 PCBP4P57723 403 aaKnown RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 RBM39Q14498 530 aaKnown RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 RAB35Q15286 201 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 GLYATL3Q5SZD4 288 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 TMEM64Q6YI46 380 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 STAC2Q6ZMT1 411 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ZNF440Q8IYI8 595 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 FBXL6Q8N531 539 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 IL17RCQ8NAC3 791 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 BPIFCQ8NFQ6 507 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 FAM71F1Q96KD3 344 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 Q96M85 177 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ZNF587Q96SQ5 575 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 WDR77Q9BQA1 342 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 PRSS38A1L453 326 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 FITM1A5D6W6 292 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 SIGLEC5O15389 551 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 P2RX6O15547 441 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 GPR75O95800 540 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 CCL5P13501 91 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 CST5P28325 142 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 HNRNPA3P51991 378 aaKnown RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 CLDN6P56747 220 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 C21orf58P58505 322 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 SIGLEC14Q08ET2 396 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 CCINQ13939 588 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 OR7A5Q15622 319 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ZNF793Q6ZN11 406 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 DPY19L2P2Q6ZN68 376 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 ZNF765Q7L2R6 523 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 KIAA0907Q7Z7F0 614 aaPredicted RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 MORN4Q8NDC4 146 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 SLC25A32Q9H2D1 315 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 MRPL22Q9NWU5 206 aaKnown RBP6.52□□□□□ -1.37
USP3-210ENST00000559192 FOXJ3Q9UPW0 622 aa6.52□□□□□ -1.37
USP3-210ENST00000559192 SIP14410 1827 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 LOC100289279A0A1B0GTE1 492 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 LOC105371267A0A1B0GV96 52 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 PRAMEF25A6NGN4 478 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 C17orf105B2RV13 164 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 H0YGG7 62 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 TRIM77I1YAP6 450 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 DVL2O14641 736 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 PRKNO60260 465 aaPredicted RBP6.51□□□□□ -1.37
USP3-210ENST00000559192 SCAF4O95104 1147 aaKnown RBP6.51□□□□□ -1.37
USP3-210ENST00000559192 ADRA2AP08913 450 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 CALCBP10092 127 aa6.51□□□□□ -1.37
USP3-210ENST00000559192 RRASP10301 218 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms