RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 RPL4P36578 427 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 RAB1AP62820 205 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 CD47Q08722 323 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 PPP1R8Q12972 351 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 ADIPOQQ15848 244 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 C1QTNF12Q5T7M4 302 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 AGAP6Q5VW22 663 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 OTPQ5XKR4 325 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 SLC25A47Q6Q0C1 308 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 RRM2BQ7LG56 351 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 TRPM8Q7Z2W7 1104 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 PIWIL3Q7Z3Z3 882 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 ZER1Q7Z7L7 766 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF584Q8IVC4 421 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 ZDHHC21Q8IVQ6 265 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 CDK20Q8IZL9 346 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 LRRC18Q8N456 261 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 PAQR4Q8N4S7 273 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 NABP1Q96AH0 204 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 CCDC124Q96CT7 223 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 RASD2Q96D21 266 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 RSRC1Q96IZ7 334 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 FOXN4Q96NZ1 517 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 KCNS3Q9BQ31 491 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 IL1RAPQ9NPH3 570 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 CA10Q9NS85 328 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 VNN3Q9NY84 501 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 ACTR3BQ9P1U1 418 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 SIGLEC7Q9Y286 467 aa10.03□□□□□ -0.8
CCDC88C-208ENST00000554165 NIPBLQ6KC79 2804 aaeCLIP10.02□□□□□ -0.8
CCDC88C-208ENST00000554165 HTR3EA5X5Y0 456 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 UNC119BA6NIH7 251 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 NPIPB13A6NJU9 1138 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 NPIPB4C9JG80 1138 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 GPRIN2O60269 458 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 GADD45GO95257 159 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 IGHMP01871 453 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 OR4A8P0C604 315 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 OR8G3PP0DMU2 310 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 CCL2P13500 99 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 RRM2P31350 389 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 APOBEC3AP31941 199 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF133P52736 654 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 TNK1Q13470 666 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 ETFDHQ16134 617 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 SGCAQ16586 387 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 SWI5Q1ZZU3 235 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 C3orf36Q3SXR2 165 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 SPATS1Q496A3 300 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 C10orf128Q5T292 105 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 KRT80Q6KB66 452 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF544Q6NX49 715 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 PRSS57Q6UWY2 283 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 FAM122BQ7Z309 247 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 CCDC36Q8IYA8 594 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 ARIH2OSQ8N7S6 290 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 MAPK1IP1LQ8NDC0 245 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 TRMT61AQ96FX7 289 aaKnown RBP10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 THTPAQ9BU02 230 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 FAIMQ9NVQ4 179 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 TMEM5Q9Y2B1 443 aa10.02□□□□□ -0.81
CCDC88C-208ENST00000554165 TEX13CA0A0J9YWL9 993 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 TMEM129A0AVI4 362 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 ACOT8O14734 319 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 SSX4O60224 188 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 TMCC2O75069 709 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 RAB36O95755 333 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 CD14P08571 375 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 MMP7P09237 267 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 INHBBP09529 407 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF35P13682 527 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 ITGA2P17301 1181 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 SERPINF1P36955 418 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF84P51523 738 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 TRIM25Q14258 630 aaKnown RBP10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 CLEC12BQ2HXU8 276 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 MESTQ5EB52 335 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 LCN8Q6JVE9 175 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 SLC16A14Q7RTX9 510 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 DHFR2Q86XF0 187 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 ZCCHC24Q8N2G6 241 aaKnown RBP10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 CPEB3Q8NE35 698 aaKnown RBP10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 MCUR1Q96AQ8 359 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 SLC7A6OSQ96CW6 309 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 C18orf12Q96KH6 178 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 GRIP2Q9C0E4 1043 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 RNF121Q9H920 327 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 FZR1Q9UM11 496 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 AURKCQ9UQB9 309 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 IER3IP1Q9Y5U9 82 aa10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 SONP18583 2426 aaKnown RBP10.01□□□□□ -0.81
CCDC88C-208ENST00000554165 FN1P02751 2386 aaKnown RBP10□□□□□ -0.81
CCDC88C-208ENST00000554165 SLC22A23A1A5C7 686 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 CENPBD1B2RD01 187 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 SOCS2O14508 198 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 MGRN1O60291 552 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 OR10H3O60404 316 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 UBL3O95164 117 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 NDUFB2O95178 105 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 PPP1R3DO95685 299 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms