RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 EID2Q8N6I1 236 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SLC25A43Q8WUT9 341 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 ASB17Q8WXJ9 295 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 TMEM159Q96B96 161 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SHDQ96IW2 340 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 VPS25Q9BRG1 176 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 G6PC3Q9BUM1 346 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 MARCH5Q9NX47 278 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SHPKQ9UHJ6 478 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 FBXW2Q9UKT8 454 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF749O43361 778 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 HCRTO43612 131 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 PGAM2P15259 253 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 HLA-GP17693 338 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ID4P47928 161 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 SLC6A11P48066 632 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 GIPRP48546 466 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 LIM2P55344 173 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 PAX5Q02548 391 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 GUCA2AQ02747 115 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 PCBP2Q15366 365 aaKnown RBP eCLIP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ATP6V1FQ16864 119 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 UBE2NLQ5JXB2 153 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 WSCD1Q658N2 575 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ENPP7Q6UWV6 458 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 TMEM108Q6UXF1 575 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 TMEM92Q6UXU6 159 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 VRK2Q86Y07 508 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 CACUL1Q86Y37 369 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 AMER3Q8N944 861 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ABHD5Q8WTS1 349 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 Q8WTZ3 238 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 SEC22AQ96IW7 307 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ALKBH7Q9BT30 221 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 PCED1AQ9H1Q7 454 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 APMAPQ9HDC9 416 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 CYTL1Q9NRR1 136 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 KCNG2Q9UJ96 466 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 TSC2P49815 1807 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 CHD3Q12873 2000 aaKnown RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 CEP290O15078 2479 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 KIR2DL5BA0A0G2JN68 375 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 KIR2DL5BA0A0G2JPC4 375 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 DHRS7CA6NNS2 312 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 IQCF5A8MTL0 148 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 MANBAO00462 879 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 KDELR3O43731 214 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 TIMP1P01033 207 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 OPN1MWP04001 364 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 OR8U9P0C7N5 309 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 OPN1MW2P0DN77 364 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 OPN1MW3P0DN78 364 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 CXCL8P10145 99 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 DTYMKP23919 212 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ELAVL4P26378 380 aaKnown RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 P2RX1P51575 399 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 DCST1Q5T197 706 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 MRM1Q6IN84 353 aaKnown RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF343Q6P1L6 599 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ARL9Q6T311 187 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 BTNL8Q6UX41 500 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 CHST9Q7L1S5 443 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 P4HA3Q7Z4N8 544 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 GKN2Q86XP6 184 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 KIR2DL5AQ8N109 375 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 OR9A4Q8NGU2 314 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 OR8U1Q8NH10 309 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ADAMTS17Q8TE56 1095 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 FRZBQ92765 325 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 IMP4Q96G21 291 aaKnown RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 JSRP1Q96MG2 331 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 WFIKKN1Q96NZ8 548 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 RNF2Q99496 336 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 SMG9Q9H0W8 520 aaKnown RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 RPF1Q9H9Y2 349 aaKnown RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 MSL2Q9HCI7 577 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 IL36AQ9UHA7 158 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF223Q9UK11 482 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 WIF1Q9Y5W5 379 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 PUS1Q9Y606 427 aaKnown RBP eCLIP8.62□□□□□ -1.03
CLIP1-214ENST00000540539 POMT1Q9Y6A1 747 aa8.62□□□□□ -1.03
CLIP1-214ENST00000540539 LOC100509620A0A075B734 347 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ANTXRLA6NF34 631 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 UMAD1C9J7I0 102 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 CCSO14618 274 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 RPN2P04844 631 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 CST2P09228 141 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 HSD3B2P26439 372 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ACVRL1P37023 503 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 NSG1P42857 185 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 DGKGP49619 791 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 STC1P52823 247 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 SRSF4Q08170 494 aaKnown RBP8.61□□□□□ -1.03
CLIP1-214ENST00000540539 EIF5AL1Q6IS14 154 aaKnown RBP8.61□□□□□ -1.03
CLIP1-214ENST00000540539 DEFB128Q7Z7B8 93 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 OR4C16Q8NGL9 310 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 OR6N1Q8NGY5 312 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 EEF1AKMT1Q8WVE0 214 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 CORO2AQ92828 525 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 HPDLQ96IR7 371 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms