RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 DUSP7Q16829 419 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 TBC1D28Q2M2D7 210 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 TUSC1Q2TAM9 212 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 AWAT1Q58HT5 328 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 FAM209AQ5JX71 171 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 OR4K5Q8NGD3 323 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 NANPQ8TBE9 248 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 ZBTB9Q96C00 473 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 SEPHS2Q99611 448 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 SLC19A3Q9BZV2 496 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 NKIRAS1Q9NYS0 192 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 CCDC167Q9P0B6 97 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 ZNF229Q9UJW7 825 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 TRIM33Q9UPN9 1127 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 ANGPT4Q9Y264 503 aa11.55□□□□□ -0.56
SS18-204ENST00000539244 CENPBD1B2RD01 187 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 M0R3H8 397 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 POLR3GO15318 223 aaPredicted RBP11.54□□□□□ -0.56
SS18-204ENST00000539244 RNF13O43567 381 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 CH25HO95992 272 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 IGHG1P01857 330 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 MT-ND5P03915 603 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 LCKP06239 509 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 QDPRP09417 244 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 MELKQ14680 651 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 ENTPD8Q5MY95 495 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 DCAF12L2Q5VW00 463 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 TTC33Q6PID6 262 aaPredicted RBP11.54□□□□□ -0.56
SS18-204ENST00000539244 DLEU7Q6UYE1 221 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 USP51Q70EK9 711 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 SLC16A14Q7RTX9 510 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 PTOV1Q86YD1 416 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 ZDHHC22Q8N966 263 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 SMYD1Q8NB12 490 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 GPR32P1Q8NGA4 272 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 OR6T1Q8NGN1 323 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 ADAMTS16Q8TE57 1224 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 MCHR2Q969V1 340 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 TIMD4Q96H15 378 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 MPP4Q96JB8 637 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 C7orf26Q96N11 449 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 SLC6A7Q99884 636 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 CPPED1Q9BRF8 314 aaPredicted RBP11.54□□□□□ -0.56
SS18-204ENST00000539244 MRPL13Q9BYD1 178 aaKnown RBP11.54□□□□□ -0.56
SS18-204ENST00000539244 PCDHAC1Q9H158 963 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 LRMDAQ9H2I8 198 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 OR51B6Q9H340 312 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 RNF121Q9H920 327 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 SAP30LQ9HAJ7 183 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 ESM1Q9NQ30 184 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 DECR2Q9NUI1 292 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 ARHGAP32A7KAX9 2087 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 TRRAPQ9Y4A5 3859 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 TANC2Q9HCD6 1990 aa11.54□□□□□ -0.56
SS18-204ENST00000539244 MEGF8Q7Z7M0 2845 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 PPIAL4EA0A075B759 164 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 PPIAL4CA0A0B4J2A2 164 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 IQCMA0A1B0GVH7 501 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 PPIAL4DF5H284 164 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 BCL10O95999 233 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 ADH4P08319 380 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 PPIAL4FP0DN26 164 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 ADRA2CP18825 462 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 MAGOHP61326 146 aaKnown RBP11.53□□□□□ -0.56
SS18-204ENST00000539244 PLP2Q04941 152 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 HFEQ30201 348 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 RUNDC3AQ59EK9 446 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 PRR31Q5SQ13 230 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 C10orf128Q5T292 105 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 TSPYL5Q86VY4 417 aaPredicted RBP11.53□□□□□ -0.56
SS18-204ENST00000539244 LRRC17Q8N6Y2 441 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 C11orf65Q8NCR3 313 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 RBM15BQ8NDT2 890 aaKnown RBP11.53□□□□□ -0.56
SS18-204ENST00000539244 GTF3AQ92664 365 aaKnown RBP11.53□□□□□ -0.56
SS18-204ENST00000539244 RAB1CQ92928 201 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 TLCD1Q96CP7 247 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 ELMOD3Q96FG2 381 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 CCDC28BQ9BUN5 200 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 NTN4Q9HB63 628 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 OPN4Q9UHM6 478 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 CACNG2Q9Y698 323 aa11.53□□□□□ -0.56
SS18-204ENST00000539244 TRAPPC13A5PLN9 417 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 CPSF4LA6NMK7 179 aaKnown RBP11.52□□□□□ -0.57
SS18-204ENST00000539244 IGHV1-46P01743 117 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 APLNRP35414 380 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 IDH3AP50213 366 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 ATP4BP51164 291 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 MMP15P51511 669 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 ZNF84P51523 738 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 CLRN1P58418 232 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 UBA52P62987 128 aaKnown RBP11.52□□□□□ -0.57
SS18-204ENST00000539244 HDDC2Q7Z4H3 204 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 RETREG3Q86VR2 466 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 BPIFB2Q8N4F0 458 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 CPEB3Q8NE35 698 aaKnown RBP11.52□□□□□ -0.57
SS18-204ENST00000539244 NOXO1Q8NFA2 376 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 OR4D11Q8NGI4 311 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 OR1J1Q8NGS3 322 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 DVL3Q92997 716 aaPredicted RBP11.52□□□□□ -0.57
SS18-204ENST00000539244 ZNF347Q96SE7 839 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms