RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 COQ10BQ9H8M1 238 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 FOLH1BQ9HBA9 442 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 WFDC1Q9HC57 220 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MCCC2Q9HCC0 563 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 VAT1LQ9HCJ6 419 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MRPL47Q9HD33 250 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 XPNPEP1Q9NQW7 623 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 BIN3Q9NQY0 253 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NANSQ9NR45 359 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TREX1Q9NSU2 369 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SMPD3Q9NY59 655 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 B3GNT2Q9NY97 397 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PLEK2Q9NYT0 353 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GLTPQ9NZD2 209 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MAT2BQ9NZL9 334 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CCDC59Q9P031 241 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 ERVK-18Q9QC07 812 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NAGKQ9UJ70 344 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ADAM28Q9UKQ2 775 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 RPH3ALQ9UNE2 315 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PSMD13Q9UNM6 376 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 COPS3Q9UNS2 423 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TP53TG5Q9Y2B4 290 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NDUFAF1Q9Y375 327 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 RBMX2Q9Y388 322 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 DHRS7Q9Y394 339 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TMEM131LA2VDJ0 1609 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 EPRSP07814 1512 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 CLASP1Q7Z460 1538 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 UGGT2Q9NYU1 1516 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PIK3C2GO75747 1445 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 UBE4BO95155 1302 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 FANCAO15360 1455 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 AQRO60306 1485 aaKnown RBP eCLIP1.45□□□□□ -2.18
NUP54-208ENST00000508604 RAPGEF2Q9Y4G8 1499 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PCM1Q15154 2024 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TCHHQ07283 1943 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ATP6AP2A0A1C7CYW4 349 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 FAM230AA0A1W2PPH8 454 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ISPDA4D126 451 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 LINC00862A6NCI5 91 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 BTBD17A6NE02 478 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 A6NIZ1 184 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 OR2AT4A6NND4 320 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CENPXA8MT69 81 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 C12orf71A8MTZ7 269 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 M0R296 226 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PHYHO14832 338 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ZBTB5O15062 677 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 STX7O15400 261 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 COCHO43405 550 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SGCEO43556 437 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PRKYO43930 277 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 HUS1O60921 280 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CTNSO60931 367 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 DNAJB6O75190 326 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ECI2O75521 394 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 STX11O75558 287 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 AKR7A3O95154 331 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TNFAIP8O95379 198 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SLC2A10O95528 541 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CXCL14O95715 111 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PGK1P00558 417 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 IL1BP01584 269 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 EPOP01588 193 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 IGHV3-9P01782 118 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GUSBP08236 651 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 STAG3L2P0CL84 134 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TRAPPC2P0DI81 140 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TRAPPC2BP0DI82 140 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 THRAP10827 490 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 THRBP10828 461 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MBL2P11226 248 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 ADRB3P13945 408 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ETS2P15036 469 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SPI1P17947 270 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 XRCC1P18887 633 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 IMPDH1P20839 514 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MSR1P21757 451 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PSMA5P28066 241 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 HSD11B1P28845 292 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PTPN6P29350 595 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PRDX6P30041 224 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 OR1E1P30953 314 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CA5AP35218 305 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GPX4P36969 197 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 CEACAM6P40199 344 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SLC1A2P43004 574 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NSFP46459 744 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 TGM4P49221 684 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CDC34P49427 236 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 SRP9P49458 86 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 ERFP50548 548 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SMSP52788 366 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PRMT2P55345 433 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SNU13P55769 128 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 AP3S2P59780 193 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ACTBP60709 375 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 HERVK_113P61574 105 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GNG11P61952 73 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms