RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CPNE4Q96A23 557 aaPredicted RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 S100PBPQ96BU1 408 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 DDIT4LQ96D03 193 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 KTI12Q96EK9 354 aaPredicted RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 ANKRD27Q96NW4 1050 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 ZNF317Q96PQ6 595 aaPredicted RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 PSD2Q9BQI7 771 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 NAA11Q9BSU3 229 aaPredicted RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 ACTR6Q9GZN1 396 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 FAM107BQ9H098 131 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 RAD21L1Q9H4I0 556 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 NANOGQ9H9S0 305 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 UBTD1Q9HAC8 227 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 CACYBPQ9HB71 228 aaKnown RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 BCL2L10Q9HD36 194 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 GLRX2Q9NS18 164 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 ADPRHL2Q9NX46 363 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 THUMPD1Q9NXG2 353 aaKnown RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 TMEM181Q9P2C4 612 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 LEF1Q9UJU2 399 aaPredicted RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 TRAPPC4Q9Y296 219 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 NOSIPQ9Y314 301 aaKnown RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 IFT52Q9Y366 437 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 HDGFL3Q9Y3E1 203 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 TEP1Q99973 2627 aaKnown RBP3.98□□□□□ -1.77
NUP54-206ENST00000508465 CCDC168Q8NDH2 2452 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 ITPR3Q14573 2671 aa3.98□□□□□ -1.77
NUP54-206ENST00000508465 FREM1Q5H8C1 2179 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 DSPPQ9NZW4 1301 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ABCA4P78363 2273 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 A0A1B0GWA3 101 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 DPRXA6NFQ7 191 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 LIPT2A6NK58 231 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 CCT8L1PA6NM43 557 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF716A6NP11 495 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF724A8MTY0 619 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 A8MVM7 634 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 LRRN3E7EW58 273 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 J3KRW8 73 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 PSMD9O00233 223 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 FAAHO00519 579 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 MRASO14807 208 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 AIM2O14862 343 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF208O43345 1280 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 SHOX2O60902 331 aaPredicted RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 MRPL33O75394 65 aaKnown RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 SERPINB7O75635 380 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 MFN2O95140 757 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 PMS2P2O95744 297 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 OPN1SWP03999 348 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 GPIP06744 558 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 UQCRBP14927 111 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ETS2P15036 469 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 TNFRSF1BP20333 461 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 CRYGSP22914 178 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 IGHV1-2P23083 117 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 IL32P24001 234 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 LOXP28300 417 aaPredicted RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 IDUAP35475 653 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 PEX19P40855 299 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 RPS5P46782 204 aaKnown RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 OR3A2P47893 321 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 CLK1P49759 484 aaKnown RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 GZMMP51124 257 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF83P51522 516 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 CDH12P55289 794 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 H3F3AP84243 136 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 IL1RL1Q01638 556 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 EGR4Q05215 589 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 LTBQ06643 244 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 FADDQ13158 208 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 CYLC2Q14093 348 aaPredicted RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 KEAP1Q14145 624 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 SLC17A1Q14916 467 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 OR1Q1Q15612 314 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 MMEL1Q495T6 779 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 OTUD3Q5T2D3 398 aaPredicted RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 C1orf140Q5VVS0 124 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 PRAMEF8Q5VWM4 474 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 PRAMEF7Q5VXH5 474 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 REP15Q6BDI9 236 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 TMEM225Q6GV28 225 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 MZT2AQ6P582 158 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 GPAT4Q86UL3 456 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 DPP10Q8N608 796 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 C10orf53Q8N6V4 93 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ATG16L2Q8NAA4 619 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 C11orf65Q8NCR3 313 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 STEAP2Q8NFT2 490 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 GPR32P1Q8NGA4 272 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 OR9K2Q8NGE7 335 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 OR4D11Q8NGI4 311 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 OR52N5Q8NH56 324 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 VANGL1Q8TAA9 524 aaPredicted RBP3.97□□□□□ -1.77
NUP54-206ENST00000508465 C10orf82Q8WW14 230 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 OIT3Q8WWZ8 545 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 MUL1Q969V5 352 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 ZNF566Q969W8 418 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 C3orf49Q96BT1 292 aa3.97□□□□□ -1.77
NUP54-206ENST00000508465 TAMM41Q96BW9 452 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms