RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 GRPRP30550 384 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 RELBQ01201 579 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 HNRNPA0Q13151 305 aaKnown RBP13.91□□□□□ -0.18
VIM-208ENST00000497849 MS4A18Q3C1V0 323 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 PAGE3Q5JUK9 113 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 C6orf89Q6UWU4 347 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 NHLRC1Q6VVB1 395 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 C9orf139Q6ZV77 190 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 PEX5LQ8IYB4 626 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 CLIP4Q8N3C7 705 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 OR52P1PQ8NH57 321 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 ZNF519Q8TB69 540 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 PNPT1Q8TCS8 783 aaKnown RBP13.91□□□□□ -0.18
VIM-208ENST00000497849 TAAR8Q969N4 342 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 ELMOD3Q96FG2 381 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 BEX1Q9HBH7 125 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 SLC6A13Q9NSD5 602 aa13.91□□□□□ -0.18
VIM-208ENST00000497849 IGHV3OR16-10A0A075B7F0 116 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 LOC100653049A0A140TA62 436 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 MDFIC2A0A1B0GVS7 189 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 FAM181BA6NEQ2 426 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 CCDC154A6NI56 674 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 TIMM23O14925 209 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 KRT34O76011 436 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 LCKP06239 509 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 OR8G3PP0DMU2 310 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 NR2F1P10589 423 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 SEC61A1P61619 476 aaKnown RBP13.9□□□□□ -0.18
VIM-208ENST00000497849 GLO1Q04760 184 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 RBBP4Q09028 425 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 CAMK2DQ13557 499 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 DPY19L1Q2PZI1 675 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 GTDC1Q4AE62 458 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 ZNF362Q5T0B9 420 aaPredicted RBP13.9□□□□□ -0.18
VIM-208ENST00000497849 OLFML2AQ68BL7 652 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 ZNF621Q6ZSS3 439 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 H1FNTQ75WM6 255 aaPredicted RBP13.9□□□□□ -0.18
VIM-208ENST00000497849 SERPINA11Q86U17 422 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 POU5F2Q8N7G0 328 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 SLC30A7Q8NEW0 376 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 VPS37AQ8NEZ2 397 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 C11orf40Q8WZ69 217 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 UBE2FQ969M7 185 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 TXNDC15Q96J42 360 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 CCDC115Q96NT0 180 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 MYLK2Q9H1R3 596 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 SLAMF8Q9P0V8 285 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 BTNL2Q9UIR0 455 aa13.9□□□□□ -0.18
VIM-208ENST00000497849 ERICH4A6NGS2 130 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 HOXA3O43365 443 aaPredicted RBP13.89□□□□□ -0.19
VIM-208ENST00000497849 IGHV1-46P01743 117 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 MTNR1AP48039 350 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 RAG2P55895 527 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 LIN52Q52LA3 116 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 TMEM255AQ5JRV8 349 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 FAM209AQ5JX71 171 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 COX20Q5RI15 118 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 FAM69AQ5T7M9 428 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 SNX32Q86XE0 403 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 UEVLDQ8IX04 471 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 FITM2Q8N6M3 262 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 OR4F5Q8NH21 305 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 GTF2H4Q92759 462 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 PANX1Q96RD7 426 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 MRI1Q9BV20 369 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 ULBP2Q9BZM5 246 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 B3GAT2Q9NPZ5 323 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 DCAF16Q9NXF7 216 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 CAPN7Q9Y6W3 813 aa13.89□□□□□ -0.19
VIM-208ENST00000497849 FBP2O00757 339 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 RFXANKO14593 260 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 OR2T1O43869 369 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 IGHV3-13P01766 116 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 CBLP22681 906 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 RBMXP38159 391 aaKnown RBP13.88□□□□□ -0.19
VIM-208ENST00000497849 ZNF81P51508 661 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 UCP2P55851 309 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 HOXC5Q00444 222 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 SPRNQ5BIV9 151 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 C6orf10Q5SRN2 563 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 RNF220Q5VTB9 566 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 CCDC121Q6ZUS5 278 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 PARP8Q8N3A8 854 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 ADPRHL1Q8NDY3 354 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 OR52E2Q8NGJ4 325 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 ITCHQ96J02 903 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 RSPO3Q9BXY4 272 aaPredicted RBP13.88□□□□□ -0.19
VIM-208ENST00000497849 PAIP1Q9H074 479 aaKnown RBP13.88□□□□□ -0.19
VIM-208ENST00000497849 C1RLQ9NZP8 487 aa13.88□□□□□ -0.19
VIM-208ENST00000497849 ZNF443Q9Y2A4 671 aaPredicted RBP13.88□□□□□ -0.19
VIM-208ENST00000497849 IGKV1D-42A0A075B6H8 117 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 CLPSL1A2RUU4 121 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 A8MXK9 166 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 SPRY3O43610 288 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 SNAP29O95721 258 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 TSPAN15O95858 294 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 PLATP00750 562 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 NGFP01138 241 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 IGHV2-70P01814 119 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 SELEP16581 610 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms