RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 MGRN1O60291 552 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 DNAJB6O75190 326 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 CIB2O75838 187 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 NDUFB10O96000 172 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 IGLV2-23P01705 113 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ALDOBP05062 364 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 FGF4P08620 206 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 CSF3P09919 207 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 GKN3PP0CG01 181 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 MCF2P10911 925 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 SFTPCP11686 197 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 HPGDP15428 266 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ATP5C1P36542 298 aaKnown RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 SLC26A3P40879 764 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ATP5OP48047 213 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 NMUP48645 174 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 PRRX1P54821 245 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 KCNJ2P63252 427 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ACTA1P68133 377 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ILKQ13418 452 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 SSX2Q16385 188 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 RFX4Q33E94 735 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 VAX1Q5SQQ9 334 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ARMC12Q5T9G4 340 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 CNIH2Q6PI25 160 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM220Q6QAJ8 160 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM107Q6UX40 140 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 C6orf120Q7Z4R8 191 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 LHFPL3Q86UP9 236 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 OFCC1Q8IZS5 231 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 PUSL1Q8N0Z8 303 aaKnown RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 GTPBP8Q8N3Z3 284 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 MS4A15Q8N5U1 240 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF709Q8N972 641 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 OR2G3Q8NGZ4 309 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 OR2G2Q8NGZ5 317 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 PLPPR1Q8TBJ4 325 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 DTX3LQ8TDB6 740 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 MCOLN3Q8TDD5 553 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 STARD8Q92502 1023 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 KIFAP3Q92845 792 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ASB9Q96DX5 294 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 AURKBQ96GD4 344 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 HSFY1Q96LI6 401 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 TSNARE1Q96NA8 513 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 KCTD14Q9BQ13 255 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF2Q9BSG1 426 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 HDHD3Q9BSH5 251 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM59Q9BXS4 323 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 PKIBQ9C010 78 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 DNTTIP1Q9H147 329 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 CLMPQ9H6B4 373 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 DMAP1Q9NPF5 467 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 LHX9Q9NQ69 397 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF226Q9NYT6 803 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 GNPTGQ9UJJ9 305 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 PACSIN2Q9UNF0 486 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 STARD10Q9Y365 291 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 HEBP2Q9Y5Z4 205 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 F11RQ9Y624 299 aaKnown RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 MSH6P52701 1360 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 NUP214P35658 2090 aaPredicted RBP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 MAP3K15Q6ZN16 1313 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 WDR62O43379 1518 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 A0A1B0GVI7 797 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 PLAC8L1A1L4L8 177 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 HEATR9A2RTY3 570 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF726A6NNF4 738 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 H3BNH8 94 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 LAD1O00515 517 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 GOSR2O14653 212 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 SS18L1O75177 396 aaPredicted RBP1.42□□□□□ -2.18
CPSF3-205ENST00000489629 SUPT3HO75486 399 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 CTAG2O75638 210 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 SERPIND1P05546 499 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 PNMA6AP0CW24 399 aaPredicted RBP1.42□□□□□ -2.18
CPSF3-205ENST00000489629 FOLR1P15328 257 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF14P17017 642 aaPredicted RBP1.42□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF30P17039 623 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 CELP19835 753 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 SLC2A5P22732 501 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 HOXA9P31269 272 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 RORAP35398 523 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 CCR8P51685 355 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 CDH6P55285 790 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 ATP5IP56385 69 aaPredicted RBP1.42□□□□□ -2.18
CPSF3-205ENST00000489629 KRTAP12-3P60328 96 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 AQP6Q13520 282 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 ARHGAP19Q14CB8 494 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 CHRNA6Q15825 494 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM183BQ1AE95 376 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 RSPO1Q2MKA7 263 aaPredicted RBP1.42□□□□□ -2.18
CPSF3-205ENST00000489629 DEFB116Q30KQ4 102 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 XKR7Q5GH72 579 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 PIGGQ5H8A4 983 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 COA6Q5JTJ3 125 aaKnown RBP1.42□□□□□ -2.18
CPSF3-205ENST00000489629 METAP1DQ6UB28 335 aaPredicted RBP1.42□□□□□ -2.18
CPSF3-205ENST00000489629 LYPD2Q6UXB3 125 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 NANOGNBQ7Z5D8 188 aa1.42□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM135Q86UB9 458 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms